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Potassium in PDB 4za9: Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor

Enzymatic activity of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor

All present enzymatic activity of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor:
4.1.1.61;

Protein crystallography data

The structure of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor, PDB code: 4za9 was solved by K.A.P.Payne, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.85 / 1.01
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 96.050, 63.850, 87.680, 90.00, 90.00, 90.00
R / Rfree (%) 13 / 14.5

Other elements in 4za9:

The structure of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor (pdb code 4za9). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor, PDB code: 4za9:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 4za9

Go back to Potassium Binding Sites List in 4za9
Potassium binding site 1 out of 2 in the Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:6.9
occ:1.00
OE2 A:GLU233 2.8 6.4 1.0
O A:MET225 2.8 6.8 1.0
O A:ALA222 2.8 6.8 1.0
O2 A:4MJ601 2.9 5.7 1.0
O4 A:4MJ601 3.0 5.9 1.0
O A:TRP169 3.1 6.5 1.0
O A:SER223 3.1 7.8 1.0
O A:HOH733 3.3 6.9 1.0
P1 A:4MJ601 3.4 5.6 1.0
C A:SER223 3.5 6.3 1.0
O3 A:4MJ601 3.6 6.2 1.0
CD A:GLU233 3.6 6.5 1.0
MN A:MN602 3.7 7.2 1.0
CA A:SER223 3.7 6.3 1.0
CG A:GLU233 3.8 6.9 1.0
C A:ALA222 3.9 6.5 1.0
C A:MET225 3.9 6.3 1.0
N A:MET225 4.1 6.6 1.0
C7 A:4MJ601 4.2 6.0 1.0
N A:SER223 4.2 6.4 1.0
C A:TRP169 4.3 6.0 1.0
C8 A:4MJ601 4.3 5.6 1.0
O5 A:4MJ601 4.3 6.5 1.0
N A:SER224 4.3 6.2 0.5
CB A:SER170 4.4 6.6 1.0
N A:SER224 4.4 6.1 0.5
CA A:SER170 4.5 6.2 1.0
CA A:MET225 4.6 6.5 1.0
OE1 A:GLU233 4.7 6.9 1.0
C A:SER224 4.8 6.4 0.5
C A:SER224 4.8 6.4 0.5
ND2 A:ASN168 4.8 6.8 1.0
O1 A:4MJ601 4.9 6.3 1.0
CG1 A:ILE227 4.9 8.4 1.0
N A:SER170 4.9 6.1 1.0
N A:ILE227 4.9 6.6 1.0
N A:PRO226 4.9 6.3 1.0
CB A:SER223 5.0 6.4 1.0
CA A:SER224 5.0 6.2 0.5
CA A:SER224 5.0 6.2 0.5

Potassium binding site 2 out of 2 in 4za9

Go back to Potassium Binding Sites List in 4za9
Potassium binding site 2 out of 2 in the Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of A. Niger FDC1 in Complex with A Phenylpyruvate Derived Adduct to the Prenylated Flavin Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:7.2
occ:1.00
O A:ARG421 2.7 7.4 1.0
O A:LEU461 2.7 8.5 1.0
O A:ASP459 2.7 7.2 1.0
OD2 A:ASP427 2.8 7.5 1.0
CG A:ASP427 3.4 7.7 1.0
C A:ASP459 3.8 6.6 1.0
C A:LEU461 3.8 7.5 1.0
C A:ARG421 3.8 6.8 1.0
CB A:ASP427 3.9 7.2 1.0
CA A:CYS422 4.1 6.7 1.0
OD1 A:ASP427 4.1 8.9 1.0
N A:LEU461 4.2 7.3 1.0
CA A:ALA460 4.3 6.6 1.0
C A:ALA460 4.4 7.0 1.0
N A:CYS422 4.4 6.6 1.0
N A:ALA460 4.4 6.6 1.0
CB A:ASP459 4.5 7.9 1.0
CG A:ASP459 4.5 9.2 1.0
N A:MET462 4.6 7.9 1.0
CA A:LEU461 4.6 7.3 1.0
CA A:MET462 4.7 8.0 1.0
N A:ARG423 4.7 6.5 1.0
OD1 A:ASP459 4.8 9.3 1.0
CA A:ASP459 4.8 6.8 1.0
OD2 A:ASP459 4.8 13.2 1.0
CA A:ARG421 4.9 6.6 1.0
CB A:CYS422 5.0 6.4 1.0

Reference:

K.A.Payne, M.D.White, K.Fisher, B.Khara, S.S.Bailey, D.Parker, N.J.Rattray, D.K.Trivedi, R.Goodacre, R.Beveridge, P.Barran, S.E.Rigby, N.S.Scrutton, S.Hay, D.Leys. New Cofactor Supports Alpha , Beta-Unsaturated Acid Decarboxylation Via 1,3-Dipolar Cycloaddition. Nature V. 522 502 2015.
ISSN: ESSN 1476-4687
PubMed: 26083754
DOI: 10.1038/NATURE14560
Page generated: Sun Dec 13 23:53:03 2020

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