Atomistry » Potassium » PDB 4wpz-4xs4 » 4x3z
Atomistry »
  Potassium »
    PDB 4wpz-4xs4 »
      4x3z »

Potassium in PDB 4x3z: Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad

Enzymatic activity of Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad

All present enzymatic activity of Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad:
1.1.1.205;

Protein crystallography data

The structure of Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad, PDB code: 4x3z was solved by J.Osipiuk, N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.20 / 1.62
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 91.262, 91.262, 171.214, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 18.2

Potassium Binding Sites:

The binding sites of Potassium atom in the Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad (pdb code 4x3z). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad, PDB code: 4x3z:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 4x3z

Go back to Potassium Binding Sites List in 4x3z
Potassium binding site 1 out of 2 in the Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:15.5
occ:0.65
O A:GLU471 2.7 22.8 1.0
O A:HIS473 2.7 23.5 1.0
O A:SER472 2.9 22.5 1.0
C A:SER472 3.4 25.4 1.0
C A:HIS473 3.6 25.4 1.0
C A:GLU471 3.8 23.6 1.0
CA A:SER472 4.0 22.4 1.0
CD2 A:HIS475 4.0 23.4 1.0
N A:HIS473 4.1 22.4 1.0
NE2 A:HIS475 4.3 24.2 1.0
N A:SER472 4.3 24.1 1.0
N A:VAL474 4.3 23.6 1.0
CA A:HIS473 4.4 23.8 1.0
CA A:VAL474 4.6 26.6 1.0
CA A:GLU471 5.0 23.5 1.0

Potassium binding site 2 out of 2 in 4x3z

Go back to Potassium Binding Sites List in 4x3z
Potassium binding site 2 out of 2 in the Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:12.9
occ:0.70
O B:GLY304 2.6 19.1 1.0
O B:CYS307 2.7 21.4 1.0
O B:GLY302 2.9 18.1 1.0
O B:HOH633 3.4 17.1 1.0
SG B:CYS307 3.5 49.1 1.0
C B:CYS307 3.7 21.3 1.0
C B:GLY304 3.8 17.3 1.0
C B:PRO303 3.9 17.0 1.0
O B:PRO303 4.0 17.1 1.0
N B:GLY304 4.1 17.4 1.0
C B:GLY302 4.1 18.3 1.0
N B:CYS307 4.2 23.8 1.0
CA B:CYS307 4.3 25.4 1.0
CB B:CYS307 4.4 31.5 1.0
CA B:PRO303 4.4 17.3 1.0
CA B:GLY304 4.5 17.8 1.0
O B:SER305 4.6 19.9 1.0
N B:THR308 4.7 18.8 1.0
N B:SER305 4.7 17.2 1.0
C B:SER305 4.8 19.6 1.0
N B:PRO303 4.8 17.3 1.0
CA B:SER305 4.9 17.7 1.0

Reference:

J.Osipiuk, N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, in Complex with Xmp and Nad To Be Published.
Page generated: Sun Dec 13 23:50:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy