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Potassium in PDB 4x11: Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Protein crystallography data
The structure of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11
was solved by
L.J.Stroh,
T.Stehle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 2.30 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 150.140, 96.100, 127.950, 90.00, 110.18, 90.00 |
| R / Rfree (%) | 16.1 / 20.1 |
Potassium Binding Sites:
The binding sites of Potassium atom in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
(pdb code 4x11). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;
Potassium binding site 1 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 1 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 2 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 2 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 3 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 3 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 4 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 4 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 5 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 5 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 6 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 6 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Reference:
L.J.Stroh,
M.S.Maginnis,
B.S.Blaum,
C.D.Nelson,
U.Neu,
G.V.Gee,
B.A.O'hara,
N.Motamedi,
D.Dimaio,
W.J.Atwood,
T.Stehle.
The Greater Affinity of Jc Polyomavirus Capsid For Alpha 2,6-Linked Lactoseries Tetrasaccharide C Than For Other Sialylated Glycans Is A Major Determinant of Infectivity. J.Virol. V. 89 6364 2015.
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
Page generated: Mon Aug 12 12:22:30 2024
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
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