Potassium »
PDB 4wpz-4xs4 »
4x11 »
Potassium in PDB 4x11: Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Protein crystallography data
The structure of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11
was solved by
L.J.Stroh,
T.Stehle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 2.30 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 150.140, 96.100, 127.950, 90.00, 110.18, 90.00 |
| R / Rfree (%) | 16.1 / 20.1 |
Potassium Binding Sites:
The binding sites of Potassium atom in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
(pdb code 4x11). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Potassium where determined in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide, PDB code: 4x11:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;
Potassium binding site 1 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 1 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 2 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 2 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 3 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 3 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 4 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 4 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 5 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 5 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Potassium binding site 6 out of 6 in 4x11
Go back to
Potassium Binding Sites List in 4x11
Potassium binding site 6 out
of 6 in the Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Jc Polyomavirus Genotype 3 VP1 in Complex with GD1A Oligosaccharide within 5.0Å range:
|
Reference:
L.J.Stroh,
M.S.Maginnis,
B.S.Blaum,
C.D.Nelson,
U.Neu,
G.V.Gee,
B.A.O'hara,
N.Motamedi,
D.Dimaio,
W.J.Atwood,
T.Stehle.
The Greater Affinity of Jc Polyomavirus Capsid For Alpha 2,6-Linked Lactoseries Tetrasaccharide C Than For Other Sialylated Glycans Is A Major Determinant of Infectivity. J.Virol. V. 89 6364 2015.
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
Page generated: Mon Aug 12 12:22:30 2024
ISSN: ESSN 1098-5514
PubMed: 25855729
DOI: 10.1128/JVI.00489-15
Last articles
Zn in 9JYWZn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
