Potassium in PDB 4wws: Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
Protein crystallography data
The structure of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes, PDB code: 4wws
was solved by
A.Hagmueller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.76 /
2.00
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.000,
128.320,
78.150,
90.00,
105.91,
90.00
|
|
R / Rfree (%)
|
19.8 /
22.9
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
(pdb code 4wws). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the
Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes, PDB code: 4wws:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
Potassium binding site 1 out
of 5 in 4wws
Go back to
Potassium Binding Sites List in 4wws
Potassium binding site 1 out
of 5 in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K301
b:21.3
occ:1.00
|
O
|
A:ILE63
|
2.7
|
16.2
|
1.0
|
|
O
|
A:GLY65
|
2.7
|
14.4
|
1.0
|
|
O
|
A:ALA68
|
2.8
|
12.2
|
1.0
|
|
HA
|
A:ASP69
|
2.9
|
19.2
|
1.0
|
|
OD1
|
A:ASP69
|
2.9
|
15.5
|
1.0
|
|
O
|
A:HOH598
|
3.2
|
30.3
|
1.0
|
|
OE2
|
B:GLU86
|
3.2
|
19.3
|
1.0
|
|
HA
|
A:LEU64
|
3.4
|
20.9
|
1.0
|
|
CD
|
B:GLU86
|
3.4
|
19.5
|
1.0
|
|
H
|
A:GLY65
|
3.5
|
18.3
|
1.0
|
|
OE1
|
B:GLU86
|
3.5
|
19.8
|
1.0
|
|
N
|
A:GLY65
|
3.7
|
15.3
|
1.0
|
|
C
|
A:ILE63
|
3.7
|
16.4
|
1.0
|
|
CA
|
A:ASP69
|
3.8
|
16.0
|
1.0
|
|
C
|
A:GLY65
|
3.8
|
14.2
|
1.0
|
|
C
|
A:ALA68
|
3.8
|
12.9
|
1.0
|
|
C
|
A:LEU64
|
3.9
|
16.5
|
1.0
|
|
HG2
|
B:GLU86
|
4.0
|
23.5
|
1.0
|
|
CA
|
A:LEU64
|
4.0
|
17.4
|
1.0
|
|
CG
|
A:ASP69
|
4.0
|
15.8
|
1.0
|
|
N
|
A:ASP69
|
4.2
|
15.6
|
1.0
|
|
OD1
|
B:ASN83
|
4.3
|
18.3
|
1.0
|
|
N
|
A:LEU64
|
4.3
|
17.1
|
1.0
|
|
CG
|
B:GLU86
|
4.3
|
19.6
|
1.0
|
|
CA
|
A:GLY65
|
4.3
|
14.6
|
1.0
|
|
CB
|
A:ASP69
|
4.4
|
16.8
|
1.0
|
|
HB
|
A:ILE63
|
4.5
|
20.6
|
1.0
|
|
H
|
A:ALA68
|
4.5
|
15.6
|
1.0
|
|
O
|
B:HOH545
|
4.5
|
24.2
|
1.0
|
|
HA
|
A:GLN66
|
4.6
|
18.8
|
1.0
|
|
HB3
|
A:ASP69
|
4.7
|
20.2
|
1.0
|
|
O
|
A:LEU64
|
4.7
|
16.4
|
1.0
|
|
O
|
A:HOH452
|
4.8
|
14.9
|
1.0
|
|
C
|
A:ASP69
|
4.8
|
15.8
|
1.0
|
|
HG22
|
A:ILE63
|
4.8
|
21.1
|
1.0
|
|
HA2
|
A:GLY65
|
4.8
|
17.6
|
1.0
|
|
CA
|
A:ILE63
|
4.9
|
17.0
|
1.0
|
|
O
|
A:ASP69
|
4.9
|
16.1
|
1.0
|
|
N
|
A:GLN66
|
4.9
|
15.8
|
1.0
|
|
HG3
|
B:GLU86
|
4.9
|
23.5
|
1.0
|
|
Potassium binding site 2 out
of 5 in 4wws
Go back to
Potassium Binding Sites List in 4wws
Potassium binding site 2 out
of 5 in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K302
b:19.7
occ:1.00
|
O
|
C:GLY65
|
2.6
|
16.2
|
1.0
|
|
O
|
C:ILE63
|
2.7
|
12.0
|
1.0
|
|
O
|
C:ALA68
|
2.8
|
13.6
|
1.0
|
|
HA
|
C:ASP69
|
3.0
|
14.5
|
1.0
|
|
OD1
|
C:ASP69
|
3.1
|
15.1
|
1.0
|
|
O
|
A:HOH453
|
3.2
|
26.4
|
1.0
|
|
O
|
C:HOH488
|
3.2
|
27.1
|
1.0
|
|
OE1
|
A:GLU86
|
3.2
|
22.0
|
1.0
|
|
H
|
C:GLY65
|
3.3
|
19.3
|
1.0
|
|
HA
|
C:LEU64
|
3.4
|
23.5
|
1.0
|
|
CD
|
A:GLU86
|
3.4
|
22.4
|
1.0
|
|
N
|
C:GLY65
|
3.5
|
16.1
|
1.0
|
|
OE2
|
A:GLU86
|
3.6
|
22.3
|
1.0
|
|
C
|
C:GLY65
|
3.7
|
15.0
|
1.0
|
|
C
|
C:ILE63
|
3.8
|
12.8
|
1.0
|
|
C
|
C:LEU64
|
3.9
|
18.6
|
1.0
|
|
C
|
C:ALA68
|
3.9
|
13.4
|
1.0
|
|
CA
|
C:ASP69
|
3.9
|
12.1
|
1.0
|
|
HG2
|
A:GLU86
|
4.0
|
27.8
|
1.0
|
|
CA
|
C:LEU64
|
4.0
|
19.6
|
1.0
|
|
CA
|
C:GLY65
|
4.2
|
15.6
|
1.0
|
|
OD1
|
A:ASN83
|
4.2
|
15.5
|
1.0
|
|
CG
|
C:ASP69
|
4.2
|
13.6
|
1.0
|
|
CG
|
A:GLU86
|
4.3
|
23.2
|
1.0
|
|
N
|
C:LEU64
|
4.3
|
18.1
|
1.0
|
|
N
|
C:ASP69
|
4.3
|
12.6
|
1.0
|
|
H
|
C:ALA68
|
4.5
|
17.7
|
1.0
|
|
O
|
A:HOH539
|
4.5
|
20.2
|
1.0
|
|
CB
|
C:ASP69
|
4.6
|
12.7
|
1.0
|
|
HA
|
C:GLN66
|
4.6
|
16.2
|
1.0
|
|
HB
|
C:ILE63
|
4.6
|
14.3
|
1.0
|
|
HA2
|
C:GLY65
|
4.6
|
18.8
|
1.0
|
|
O
|
C:LEU64
|
4.6
|
18.7
|
1.0
|
|
HB3
|
A:GLU86
|
4.6
|
28.3
|
1.0
|
|
O
|
C:HOH558
|
4.7
|
17.9
|
1.0
|
|
HG22
|
C:ILE63
|
4.7
|
14.1
|
1.0
|
|
O
|
C:HOH415
|
4.8
|
24.8
|
1.0
|
|
HB3
|
C:ASP69
|
4.8
|
15.2
|
1.0
|
|
N
|
C:GLN66
|
4.8
|
13.2
|
1.0
|
|
C
|
C:ASP69
|
4.9
|
12.4
|
1.0
|
|
O
|
C:ASP69
|
4.9
|
12.6
|
1.0
|
|
HA3
|
C:GLY65
|
4.9
|
18.8
|
1.0
|
|
CA
|
C:ILE63
|
4.9
|
13.0
|
1.0
|
|
Potassium binding site 3 out
of 5 in 4wws
Go back to
Potassium Binding Sites List in 4wws
Potassium binding site 3 out
of 5 in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K301
b:19.4
occ:1.00
|
O
|
B:GLY65
|
2.7
|
16.3
|
1.0
|
|
O
|
B:ILE63
|
2.7
|
14.6
|
1.0
|
|
HA
|
B:ASP69
|
2.8
|
16.4
|
1.0
|
|
OD1
|
B:ASP69
|
2.8
|
14.4
|
1.0
|
|
O
|
B:ALA68
|
2.9
|
12.7
|
1.0
|
|
O
|
E:HOH434
|
2.9
|
13.8
|
1.0
|
|
O
|
B:HOH459
|
3.0
|
29.2
|
1.0
|
|
OE1
|
E:GLU86
|
3.3
|
19.3
|
1.0
|
|
CD
|
E:GLU86
|
3.4
|
20.4
|
1.0
|
|
HA
|
B:LEU64
|
3.5
|
16.1
|
1.0
|
|
H
|
B:GLY65
|
3.5
|
19.0
|
1.0
|
|
OE2
|
E:GLU86
|
3.5
|
20.9
|
1.0
|
|
HD21
|
E:ASN83
|
3.6
|
21.6
|
1.0
|
|
N
|
B:GLY65
|
3.7
|
15.8
|
1.0
|
|
CA
|
B:ASP69
|
3.7
|
13.7
|
1.0
|
|
C
|
B:ILE63
|
3.8
|
14.3
|
1.0
|
|
C
|
B:GLY65
|
3.8
|
16.4
|
1.0
|
|
C
|
B:ALA68
|
3.8
|
12.6
|
1.0
|
|
CG
|
B:ASP69
|
3.9
|
14.0
|
1.0
|
|
HG2
|
E:GLU86
|
4.0
|
25.2
|
1.0
|
|
C
|
B:LEU64
|
4.0
|
13.0
|
1.0
|
|
HD22
|
E:ASN83
|
4.0
|
21.6
|
1.0
|
|
CA
|
B:LEU64
|
4.1
|
13.4
|
1.0
|
|
ND2
|
E:ASN83
|
4.1
|
18.0
|
1.0
|
|
N
|
B:ASP69
|
4.2
|
13.3
|
1.0
|
|
CG
|
E:GLU86
|
4.3
|
21.0
|
1.0
|
|
CB
|
B:ASP69
|
4.3
|
14.1
|
1.0
|
|
CA
|
B:GLY65
|
4.4
|
16.2
|
1.0
|
|
N
|
B:LEU64
|
4.4
|
13.4
|
1.0
|
|
O
|
E:HOH425
|
4.6
|
15.3
|
1.0
|
|
H
|
B:ALA68
|
4.6
|
14.5
|
1.0
|
|
HB3
|
B:ASP69
|
4.6
|
16.9
|
1.0
|
|
HB
|
B:ILE63
|
4.6
|
17.3
|
1.0
|
|
O
|
B:HOH412
|
4.7
|
14.7
|
1.0
|
|
HA
|
B:GLN66
|
4.7
|
17.6
|
1.0
|
|
HG22
|
B:ILE63
|
4.7
|
16.8
|
1.0
|
|
O
|
B:LEU64
|
4.7
|
12.8
|
1.0
|
|
C
|
B:ASP69
|
4.8
|
14.0
|
1.0
|
|
HA2
|
B:GLY65
|
4.8
|
19.4
|
1.0
|
|
O
|
B:HOH442
|
4.8
|
21.7
|
1.0
|
|
O
|
B:ASP69
|
4.9
|
14.3
|
1.0
|
|
HB3
|
E:GLU86
|
4.9
|
25.3
|
1.0
|
|
CA
|
B:ILE63
|
4.9
|
14.8
|
1.0
|
|
N
|
B:GLN66
|
5.0
|
15.3
|
1.0
|
|
HG3
|
E:GLU86
|
5.0
|
25.2
|
1.0
|
|
OD2
|
B:ASP69
|
5.0
|
14.1
|
1.0
|
|
Potassium binding site 4 out
of 5 in 4wws
Go back to
Potassium Binding Sites List in 4wws
Potassium binding site 4 out
of 5 in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K301
b:20.5
occ:1.00
|
O
|
D:GLY65
|
2.7
|
16.2
|
1.0
|
|
O
|
D:ILE63
|
2.7
|
14.6
|
1.0
|
|
HA
|
D:ASP69
|
2.9
|
22.6
|
1.0
|
|
O
|
D:ALA68
|
3.0
|
12.2
|
1.0
|
|
O
|
D:HOH477
|
3.0
|
13.6
|
1.0
|
|
OE1
|
C:GLU86
|
3.0
|
18.0
|
1.0
|
|
OD1
|
D:ASP69
|
3.0
|
20.8
|
1.0
|
|
CD
|
C:GLU86
|
3.2
|
18.3
|
1.0
|
|
H
|
D:GLY65
|
3.2
|
18.6
|
1.0
|
|
OE2
|
C:GLU86
|
3.3
|
19.0
|
1.0
|
|
HA
|
D:LEU64
|
3.4
|
19.6
|
1.0
|
|
O
|
C:HOH469
|
3.5
|
39.4
|
1.0
|
|
HD21
|
C:ASN83
|
3.5
|
19.3
|
1.0
|
|
N
|
D:GLY65
|
3.5
|
15.5
|
1.0
|
|
HG2
|
C:GLU86
|
3.7
|
22.5
|
1.0
|
|
C
|
D:GLY65
|
3.7
|
15.1
|
1.0
|
|
C
|
D:ILE63
|
3.8
|
14.7
|
1.0
|
|
CA
|
D:ASP69
|
3.9
|
18.8
|
1.0
|
|
C
|
D:LEU64
|
3.9
|
15.7
|
1.0
|
|
C
|
D:ALA68
|
3.9
|
12.1
|
1.0
|
|
HD22
|
C:ASN83
|
4.0
|
19.3
|
1.0
|
|
CG
|
C:GLU86
|
4.0
|
18.8
|
1.0
|
|
CA
|
D:LEU64
|
4.0
|
16.3
|
1.0
|
|
CG
|
D:ASP69
|
4.1
|
20.5
|
1.0
|
|
ND2
|
C:ASN83
|
4.1
|
16.1
|
1.0
|
|
CA
|
D:GLY65
|
4.2
|
15.2
|
1.0
|
|
N
|
D:ASP69
|
4.3
|
17.1
|
1.0
|
|
N
|
D:LEU64
|
4.4
|
15.8
|
1.0
|
|
CB
|
D:ASP69
|
4.5
|
20.2
|
1.0
|
|
O
|
C:HOH426
|
4.6
|
23.8
|
1.0
|
|
HA
|
D:GLN66
|
4.6
|
18.6
|
1.0
|
|
H
|
D:ALA68
|
4.6
|
14.0
|
1.0
|
|
HA2
|
D:GLY65
|
4.6
|
18.2
|
1.0
|
|
HB3
|
D:ASP69
|
4.7
|
24.3
|
1.0
|
|
HG3
|
C:GLU86
|
4.7
|
22.5
|
1.0
|
|
O
|
D:LEU64
|
4.7
|
14.7
|
1.0
|
|
OD1
|
C:ASN87
|
4.7
|
23.4
|
1.0
|
|
HB3
|
C:GLU86
|
4.7
|
22.6
|
1.0
|
|
HB
|
D:ILE63
|
4.8
|
18.0
|
1.0
|
|
N
|
D:GLN66
|
4.9
|
14.7
|
1.0
|
|
C
|
D:ASP69
|
4.9
|
19.4
|
1.0
|
|
HG22
|
D:ILE63
|
4.9
|
16.9
|
1.0
|
|
O
|
D:ASP69
|
4.9
|
20.1
|
1.0
|
|
O
|
C:HOH498
|
4.9
|
22.2
|
1.0
|
|
HA3
|
D:GLY65
|
5.0
|
18.2
|
1.0
|
|
O
|
D:HOH453
|
5.0
|
20.8
|
1.0
|
|
Potassium binding site 5 out
of 5 in 4wws
Go back to
Potassium Binding Sites List in 4wws
Potassium binding site 5 out
of 5 in the Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of Chlorite Dismutase-Like Protein From Listeria Monocytogenes within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K301
b:28.3
occ:1.00
|
O
|
E:ILE63
|
2.8
|
16.0
|
1.0
|
|
O
|
E:GLY65
|
2.8
|
13.0
|
1.0
|
|
OD1
|
E:ASP69
|
2.8
|
20.0
|
1.0
|
|
O
|
D:HOH480
|
2.9
|
34.2
|
1.0
|
|
HA
|
E:ASP69
|
2.9
|
22.4
|
1.0
|
|
O
|
E:ALA68
|
2.9
|
13.5
|
1.0
|
|
O
|
E:HOH545
|
3.0
|
25.1
|
1.0
|
|
OE2
|
D:GLU86
|
3.2
|
22.6
|
1.0
|
|
OE1
|
D:GLU86
|
3.2
|
23.6
|
1.0
|
|
CD
|
D:GLU86
|
3.2
|
23.2
|
1.0
|
|
H
|
E:GLY65
|
3.3
|
17.9
|
1.0
|
|
HA
|
E:LEU64
|
3.3
|
22.7
|
1.0
|
|
N
|
E:GLY65
|
3.5
|
14.9
|
1.0
|
|
HD21
|
D:ASN83
|
3.8
|
26.5
|
1.0
|
|
C
|
E:GLY65
|
3.8
|
13.1
|
1.0
|
|
CA
|
E:ASP69
|
3.8
|
18.7
|
1.0
|
|
C
|
E:ILE63
|
3.8
|
16.1
|
1.0
|
|
C
|
E:LEU64
|
3.9
|
17.7
|
1.0
|
|
CG
|
E:ASP69
|
3.9
|
19.6
|
1.0
|
|
C
|
E:ALA68
|
3.9
|
14.1
|
1.0
|
|
CA
|
E:LEU64
|
4.0
|
18.9
|
1.0
|
|
HG2
|
D:GLU86
|
4.0
|
28.4
|
1.0
|
|
HD22
|
D:ASN83
|
4.2
|
26.5
|
1.0
|
|
CG
|
D:GLU86
|
4.2
|
23.7
|
1.0
|
|
CA
|
E:GLY65
|
4.2
|
13.2
|
1.0
|
|
ND2
|
D:ASN83
|
4.3
|
22.1
|
1.0
|
|
N
|
E:ASP69
|
4.3
|
17.5
|
1.0
|
|
CB
|
E:ASP69
|
4.4
|
19.1
|
1.0
|
|
N
|
E:LEU64
|
4.4
|
18.4
|
1.0
|
|
O
|
D:HOH439
|
4.4
|
18.1
|
1.0
|
|
HB3
|
E:ASP69
|
4.6
|
23.0
|
1.0
|
|
HA2
|
E:GLY65
|
4.6
|
15.8
|
1.0
|
|
H
|
E:ALA68
|
4.7
|
15.0
|
1.0
|
|
HB3
|
D:GLU86
|
4.7
|
28.4
|
1.0
|
|
HA
|
E:GLN66
|
4.7
|
19.2
|
1.0
|
|
O
|
E:LEU64
|
4.7
|
17.4
|
1.0
|
|
HB
|
E:ILE63
|
4.8
|
18.3
|
1.0
|
|
C
|
E:ASP69
|
4.9
|
18.9
|
1.0
|
|
OD1
|
D:ASN87
|
4.9
|
22.5
|
1.0
|
|
O
|
E:ASP69
|
4.9
|
20.0
|
1.0
|
|
O
|
E:HOH436
|
4.9
|
22.0
|
1.0
|
|
HG22
|
E:ILE63
|
4.9
|
18.6
|
1.0
|
|
N
|
E:GLN66
|
4.9
|
15.8
|
1.0
|
|
HG3
|
D:GLU86
|
4.9
|
28.4
|
1.0
|
|
O
|
D:HOH543
|
5.0
|
18.5
|
1.0
|
|
OD2
|
E:ASP69
|
5.0
|
18.9
|
1.0
|
|
Reference:
S.Hofbauer,
A.Hagmuller,
I.Schaffner,
G.Mlynek,
M.Krutzler,
G.Stadlmayr,
K.F.Pirker,
C.Obinger,
H.Daims,
K.Djinovic-Carugo,
P.G.Furtmuller.
Structure and Heme-Binding Properties of Hemq (Chlorite Dismutase-Like Protein) From Listeria Monocytogenes. Arch.Biochem.Biophys. 2015.
ISSN: ESSN 1096-0384
PubMed: 25602700
DOI: 10.1016/J.ABB.2015.01.010
Page generated: Mon Aug 12 12:21:51 2024
|
