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Potassium in PDB 4wol: Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase

Protein crystallography data

The structure of Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase, PDB code: 4wol was solved by M.J.Call, M.E.Call, K.Knoblich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.67 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 20.775, 35.709, 101.070, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase (pdb code 4wol). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase, PDB code: 4wol:

Potassium binding site 1 out of 1 in 4wol

Go back to Potassium Binding Sites List in 4wol
Potassium binding site 1 out of 1 in the Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the DAP12 Transmembrane Domain in Lipidic Cubic Phase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:17.8
occ:1.00
OD2 C:ASP23 2.7 21.3 1.0
OG1 B:THR27 2.7 15.3 1.0
OD2 A:ASP23 2.8 28.0 1.0
OG1 C:THR27 2.8 18.9 1.0
OD1 A:ASP23 2.9 26.8 1.0
OG1 A:THR27 2.9 20.8 1.0
OD1 B:ASP23 3.0 20.4 1.0
CG A:ASP23 3.2 24.8 1.0
CG C:ASP23 3.7 25.5 1.0
CG2 B:THR27 3.9 17.4 1.0
CB B:THR27 3.9 14.7 1.0
CG B:ASP23 4.0 32.8 1.0
CB C:THR27 4.1 15.0 1.0
OD1 C:ASP23 4.1 30.1 1.0
OD2 B:ASP23 4.1 29.1 1.0
CG2 C:THR27 4.2 15.2 1.0
CB A:THR27 4.2 13.6 1.0
O A:ASP23 4.4 21.4 1.0
CG2 A:THR27 4.5 14.0 1.0
O C:ASP23 4.7 20.1 1.0
CB A:ASP23 4.7 17.3 1.0
O B:ASP23 4.8 16.1 1.0
CA B:THR27 4.9 13.9 1.0
C A:ASP23 4.9 18.9 1.0

Reference:

K.Knoblich, S.Park, M.Lutfi, L.Van 't Hag, C.E.Conn, S.A.Seabrook, J.Newman, P.E.Czabotar, W.Im, M.E.Call, M.J.Call. Transmembrane Complexes of DAP12 Crystallized in Lipid Membranes Provide Insights Into Control of Oligomerization in Immunoreceptor Assembly. Cell Rep V. 11 1184 2015.
ISSN: ESSN 2211-1247
PubMed: 25981043
DOI: 10.1016/J.CELREP.2015.04.045
Page generated: Mon Aug 12 12:19:51 2024

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