Atomistry » Potassium » PDB 4qxg-4tog » 4tlz
Atomistry »
  Potassium »
    PDB 4qxg-4tog »
      4tlz »

Potassium in PDB 4tlz: Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn

Protein crystallography data

The structure of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn, PDB code: 4tlz was solved by J.W.Setser, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.30 / 2.41
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.620, 157.660, 165.293, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn (pdb code 4tlz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn, PDB code: 4tlz:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 1 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K504

b:48.2
occ:1.00
 O A:SER33 2.7 28.2 1.0
O A:LEU30 3.0 24.7 1.0
O A:ALA35 3.3 38.2 1.0
O A:GLU31 3.4 27.3 1.0
O A:HOH736 3.6 29.1 1.0
C A:SER33 3.9 28.6 1.0
C A:GLU31 3.9 24.8 1.0
CA A:GLU31 4.0 23.9 1.0
C A:LEU30 4.0 23.1 1.0
C A:ALA35 4.4 38.5 1.0
N A:SER33 4.5 27.7 1.0
N A:GLU31 4.5 23.8 1.0
CA A:SER33 4.6 26.4 1.0
C A:PRO34 4.7 30.7 1.0
O A:PRO34 4.7 34.4 1.0
N A:GLU32 4.8 25.7 1.0
N A:PRO34 4.9 24.5 1.0
CB A:SER33 4.9 25.9 1.0
CA A:PRO34 5.0 32.5 1.0
N A:ALA35 5.0 30.7 1.0
C A:GLU32 5.0 27.0 1.0

Potassium binding site 2 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 2 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K505

b:40.0
occ:1.00
 O A:LEU118 2.8 34.2 1.0
O A:GLU115 2.8 31.2 1.0
O A:HOH650 2.9 36.5 1.0
O A:HIS120 3.0 40.8 1.0
O A:SER116 3.6 31.9 1.0
OE1 A:GLU121 3.8 55.3 1.0
C A:LEU118 3.8 33.0 1.0
K A:K506 3.9 79.0 1.0
C A:GLU115 3.9 27.7 1.0
CB A:LEU118 4.0 29.2 1.0
C A:HIS120 4.1 33.6 1.0
C A:SER116 4.1 24.3 1.0
CA A:SER116 4.2 30.7 1.0
CA A:LEU118 4.3 32.2 1.0
CD A:GLU121 4.3 56.0 1.0
OE2 A:GLU115 4.4 41.4 1.0
O A:ALA119 4.4 36.6 1.0
N A:LEU118 4.4 26.0 1.0
CA A:GLU121 4.5 30.2 1.0
N A:SER116 4.5 25.0 1.0
CD A:GLU115 4.5 33.5 1.0
OE2 A:GLU121 4.6 60.5 1.0
C A:ALA119 4.6 32.5 1.0
OE1 A:GLU115 4.6 31.8 1.0
N A:GLU121 4.7 33.8 1.0
N A:ALA119 4.9 31.3 1.0
CG A:LEU118 4.9 31.9 1.0
N A:HIS120 5.0 32.6 1.0

Potassium binding site 3 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 3 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K506

b:79.0
occ:1.00
 O A:SER116 2.6 31.9 1.0
O A:LEU118 2.9 34.2 1.0
C A:LEU118 3.8 33.0 1.0
C A:SER116 3.8 24.3 1.0
K A:K505 3.9 40.0 1.0
O A:LYS117 4.0 29.5 1.0
C A:LYS117 4.1 26.8 1.0
CA A:ALA119 4.4 31.8 1.0
N A:ALA119 4.5 31.3 1.0
N A:LEU118 4.5 26.0 1.0
O A:ALA119 4.5 36.6 1.0
CA A:LYS117 4.5 25.0 1.0
N A:LYS117 4.6 24.5 1.0
CA A:LEU118 4.8 32.2 1.0
C A:ALA119 4.8 32.5 1.0
CA A:SER116 4.9 30.7 1.0

Potassium binding site 4 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 4 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K504

b:47.1
occ:1.00
 O B:SER33 2.6 34.7 1.0
O B:LEU30 2.8 23.4 1.0
O B:ALA35 3.1 36.1 1.0
O B:GLU31 3.4 26.3 1.0
C B:SER33 3.7 28.3 1.0
C B:GLU31 3.9 24.9 1.0
C B:LEU30 3.9 19.4 1.0
CA B:GLU31 4.0 21.3 1.0
C B:ALA35 4.2 36.6 1.0
N B:SER33 4.3 24.5 1.0
N B:GLU31 4.4 20.2 1.0
CA B:SER33 4.5 25.7 1.0
C B:PRO34 4.6 37.8 1.0
O B:PRO34 4.6 40.8 1.0
CB B:SER33 4.6 26.4 1.0
N B:PRO34 4.7 29.8 1.0
N B:GLU32 4.8 23.8 1.0
N B:ALA35 4.8 32.4 1.0
CA B:PRO34 4.9 35.1 1.0
C B:GLU32 4.9 24.5 1.0

Potassium binding site 5 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 5 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K505

b:55.9
occ:1.00
 O B:HOH610 2.9 49.5 1.0
O B:LEU118 3.0 39.0 1.0
O B:GLU115 3.0 30.5 1.0
O B:HOH703 3.1 37.3 1.0
O B:HIS120 3.4 46.7 1.0
O B:SER116 3.5 37.2 1.0
CA B:SER116 4.0 25.0 1.0
C B:SER116 4.0 27.9 1.0
C B:GLU115 4.0 30.4 1.0
CG B:GLU121 4.1 55.3 1.0
C B:LEU118 4.1 33.3 1.0
OE2 B:GLU115 4.3 40.9 1.0
CB B:LEU118 4.4 31.1 1.0
N B:SER116 4.5 26.6 1.0
C B:HIS120 4.5 37.7 1.0
CD B:GLU115 4.5 39.2 1.0
OE1 B:GLU115 4.6 37.9 1.0
OE1 B:GLU121 4.6 75.8 1.0
N B:LEU118 4.6 29.2 1.0
CA B:LEU118 4.6 30.6 1.0
O B:ALA119 4.6 55.0 1.0
CA B:GLU121 4.7 38.8 1.0
CD B:GLU121 4.9 64.9 1.0
C B:ALA119 5.0 46.6 1.0

Potassium binding site 6 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 6 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K504

b:64.8
occ:1.00
 O C:SER33 2.9 48.1 1.0
O C:LEU30 3.0 41.5 1.0
O C:GLU31 3.4 38.2 1.0
O C:ALA35 3.4 62.6 1.0
C C:GLU31 3.9 35.7 1.0
CA C:GLU31 4.0 33.7 1.0
C C:SER33 4.1 50.4 1.0
C C:LEU30 4.1 40.0 1.0
N C:GLU31 4.5 37.6 1.0
C C:ALA35 4.5 62.0 1.0
N C:SER33 4.6 33.1 1.0
O C:PRO34 4.8 62.0 1.0
CA C:SER33 4.8 48.3 1.0
C C:PRO34 4.8 59.8 1.0
N C:GLU32 4.9 34.9 1.0

Potassium binding site 7 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 7 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K505

b:60.0
occ:1.00
 O C:HIS120 3.0 60.5 1.0
O C:GLU115 3.0 40.6 1.0
O C:LEU118 3.0 45.9 1.0
O C:HOH714 3.5 42.4 1.0
OE1 C:GLU121 3.5 72.6 1.0
O C:SER116 3.8 47.9 1.0
CD C:GLU121 4.0 71.9 1.0
C C:LEU118 4.0 46.8 1.0
C C:HIS120 4.1 52.9 1.0
C C:GLU115 4.1 41.9 1.0
OE2 C:GLU115 4.2 50.1 1.0
CA C:SER116 4.3 37.5 1.0
C C:SER116 4.3 42.1 1.0
OE2 C:GLU121 4.3 74.4 1.0
CB C:LEU118 4.3 41.2 1.0
CA C:GLU121 4.3 48.2 1.0
CD C:GLU115 4.4 43.8 1.0
O C:ALA119 4.5 43.6 1.0
OE1 C:GLU115 4.6 43.1 1.0
CA C:LEU118 4.6 39.3 1.0
N C:SER116 4.6 38.2 1.0
N C:GLU121 4.7 49.3 1.0
N C:LEU118 4.7 36.7 1.0
C C:ALA119 4.8 49.6 1.0

Potassium binding site 8 out of 8 in 4tlz

Go back to Potassium Binding Sites List in 4tlz
Potassium binding site 8 out of 8 in the Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Kutzneria Sp. 744 Ornithine N-Hydroxylase, Ktzi-Fadox-Nadp+-L-Orn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K504

b:54.3
occ:1.00
 O D:SER33 2.8 37.8 1.0
O D:LEU30 3.0 32.8 1.0
O D:GLU31 3.3 34.0 1.0
O D:ALA35 3.4 48.2 1.0
C D:GLU31 3.8 33.5 1.0
CA D:GLU31 3.9 30.4 1.0
C D:SER33 4.0 35.2 1.0
C D:LEU30 4.0 29.9 1.0
N D:GLU31 4.5 30.2 1.0
C D:ALA35 4.5 44.6 1.0
N D:SER33 4.5 34.1 1.0
CA D:SER33 4.7 33.1 1.0
O D:PRO34 4.8 41.8 1.0
C D:PRO34 4.8 43.1 1.0
N D:GLU32 4.8 34.8 1.0
N D:PRO34 5.0 42.8 1.0
CB D:SER33 5.0 32.7 1.0

Reference:

J.W.Setser, J.R.Heemstra, C.T.Walsh, C.L.Drennan. Crystallographic Evidence For Drastic Conformational Changes in the Active Site of A Flavin-Dependent N-Hydroxylase. Biochemistry 2014.
ISSN: ISSN 0006-2960
PubMed: 25184411
DOI: 10.1021/BI500655Q
Page generated: Mon Aug 12 12:06:36 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy