Atomistry » Potassium » PDB 4qxg-4tog » 4rbq
Atomistry »
  Potassium »
    PDB 4qxg-4tog »
      4rbq »

Potassium in PDB 4rbq: 32 Base Pair Oligo(U) Rna

Protein crystallography data

The structure of 32 Base Pair Oligo(U) Rna, PDB code: 4rbq was solved by B.H.M.Mooers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.79 / 1.05
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 42.890, 42.890, 266.936, 90.00, 90.00, 120.00
R / Rfree (%) 13.1 / 15.4

Potassium Binding Sites:

The binding sites of Potassium atom in the 32 Base Pair Oligo(U) Rna (pdb code 4rbq). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the 32 Base Pair Oligo(U) Rna, PDB code: 4rbq:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 4rbq

Go back to Potassium Binding Sites List in 4rbq
Potassium binding site 1 out of 5 in the 32 Base Pair Oligo(U) Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 32 Base Pair Oligo(U) Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:34.9
occ:0.24
H5'' A:A10 2.8 16.5 1.0
OP1 A:A10 2.9 15.0 1.0
O A:HOH432 3.2 35.2 0.4
O A:HOH432 3.2 33.1 0.6
H5' A:A10 3.3 16.5 1.0
C5' A:A10 3.5 13.7 1.0
O A:HOH212 3.9 17.9 0.4
P A:A10 4.1 13.9 1.0
O5' A:A10 4.2 13.6 1.0
O3' A:A9 4.5 14.0 1.0
H4' A:A10 4.6 15.3 1.0
C4' A:A10 4.7 12.7 1.0

Potassium binding site 2 out of 5 in 4rbq

Go back to Potassium Binding Sites List in 4rbq
Potassium binding site 2 out of 5 in the 32 Base Pair Oligo(U) Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of 32 Base Pair Oligo(U) Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:20.2
occ:0.22
OP1 A:A16 2.9 11.9 1.0
H5'' A:A16 2.9 12.4 1.0
O A:HOH320 2.9 36.8 1.0
H5' A:A16 3.4 12.4 1.0
O A:HOH251 3.6 29.6 1.0
C5' A:A16 3.6 10.3 1.0
O A:HOH202 3.8 13.9 0.4
P A:A16 4.1 10.7 1.0
O5' A:A16 4.3 10.7 1.0
O3' A:A15 4.5 10.8 1.0
H4' A:A16 4.7 12.5 1.0
C4' A:A16 4.7 10.4 1.0
HO2' A:A15 5.0 16.4 1.0

Potassium binding site 3 out of 5 in 4rbq

Go back to Potassium Binding Sites List in 4rbq
Potassium binding site 3 out of 5 in the 32 Base Pair Oligo(U) Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of 32 Base Pair Oligo(U) Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K103

b:24.7
occ:0.21
O2' A:U31 2.8 12.6 1.0
H5' A:U32 2.9 16.0 1.0
HO2' A:U31 3.1 15.1 1.0
O3' A:U31 3.4 12.9 1.0
H4' A:U31 3.4 14.6 1.0
C5' A:U32 3.9 13.3 1.0
C2' A:U31 4.0 12.0 1.0
C3' A:U31 4.0 12.5 1.0
C4' A:U31 4.2 12.2 1.0
H5'' A:U32 4.2 16.0 1.0
O A:HOH226 4.4 18.7 0.3
P A:U32 4.5 13.7 1.0
OP1 A:U32 4.5 15.8 1.0
O5' A:U32 4.5 13.4 1.0
H2' A:U31 4.6 14.4 1.0
H4' A:U32 4.7 16.4 1.0
C4' A:U32 4.7 13.7 1.0
O4' A:U32 4.9 13.0 1.0
O A:HOH213 4.9 15.4 1.0
C1' A:U31 5.0 11.5 1.0
H1' A:U31 5.0 13.8 1.0
H3' A:U31 5.0 15.0 1.0
O4' A:U31 5.0 11.8 1.0

Potassium binding site 4 out of 5 in 4rbq

Go back to Potassium Binding Sites List in 4rbq
Potassium binding site 4 out of 5 in the 32 Base Pair Oligo(U) Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of 32 Base Pair Oligo(U) Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K104

b:16.2
occ:0.18
H5'' A:U21 2.9 11.6 1.0
OP1 A:U21 2.9 10.8 1.0
O A:HOH404 3.5 33.2 1.0
H5' A:U21 3.5 11.6 1.0
C5' A:U21 3.6 9.7 1.0
P A:U21 4.1 9.7 1.0
O5' A:U21 4.3 9.5 1.0
K A:K105 4.4 16.8 0.2
O3' A:U20 4.6 9.6 1.0
H4' A:U21 4.7 11.1 1.0
C4' A:U21 4.8 9.2 1.0
O A:HOH309 4.9 42.5 1.0

Potassium binding site 5 out of 5 in 4rbq

Go back to Potassium Binding Sites List in 4rbq
Potassium binding site 5 out of 5 in the 32 Base Pair Oligo(U) Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of 32 Base Pair Oligo(U) Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K105

b:16.8
occ:0.19
O2' A:U20 2.8 10.2 1.0
H5' A:U21 3.0 11.6 1.0
HO2' A:U20 3.0 12.3 1.0
O A:HOH225 3.3 30.3 0.4
H4' A:U20 3.5 11.7 1.0
O3' A:U20 3.5 9.6 1.0
C5' A:U21 3.9 9.7 1.0
C2' A:U20 4.0 9.4 1.0
C3' A:U20 4.1 9.3 1.0
C4' A:U20 4.3 9.7 1.0
H5'' A:U21 4.3 11.6 1.0
K A:K104 4.4 16.2 0.2
P A:U21 4.5 9.7 1.0
OP1 A:U21 4.5 10.8 1.0
O5' A:U21 4.6 9.5 1.0
H2' A:U20 4.6 11.2 1.0
H4' A:U21 4.6 11.1 1.0
C4' A:U21 4.8 9.2 1.0
O A:HOH206 4.8 12.5 1.0
O4' A:U21 4.9 9.1 1.0
H1' A:U20 5.0 11.4 1.0
C1' A:U20 5.0 9.5 1.0

Reference:

B.H.M.Mooers, B.H.M.Mooers. N/A N/A.
Page generated: Sun Dec 13 23:48:42 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy