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Potassium in PDB 4nmc: Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12

Enzymatic activity of Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12

All present enzymatic activity of Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12:
1.2.1.88; 1.5.1.12; 1.5.99.8;

Protein crystallography data

The structure of Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12, PDB code: 4nmc was solved by H.Singh, J.J.Tanner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.04 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 94.078, 157.207, 190.762, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12 (pdb code 4nmc). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12, PDB code: 4nmc:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 4nmc

Go back to Potassium Binding Sites List in 4nmc
Potassium binding site 1 out of 2 in the Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K2003

b:18.1
occ:1.00
O A:ILE682 2.7 20.1 1.0
O A:VAL528 2.7 20.6 1.0
O A:HOH2119 2.7 22.1 1.0
O A:GLU595 2.7 22.3 1.0
O A:HOH2441 2.7 31.9 1.0
OG1 A:THR527 2.9 27.2 1.0
CG A:GLU595 3.5 20.2 1.0
N A:VAL528 3.6 28.1 1.0
C A:ILE682 3.7 23.2 1.0
C A:VAL528 3.8 26.2 1.0
C A:GLU595 3.8 19.7 1.0
CB A:ILE682 4.1 22.9 1.0
CA A:ILE682 4.2 24.4 1.0
CB A:THR527 4.2 20.7 1.0
CA A:VAL528 4.3 26.6 1.0
C A:THR527 4.3 26.7 1.0
CA A:GLU595 4.3 21.2 1.0
CA A:THR527 4.4 21.6 1.0
CD A:GLU595 4.4 22.9 1.0
OE2 A:GLU595 4.5 20.7 1.0
CB A:GLU595 4.5 18.7 1.0
O A:HOH2324 4.5 28.0 1.0
CD A:PRO530 4.6 19.1 1.0
O A:HOH2223 4.8 21.6 1.0
N A:THR683 4.9 16.8 1.0
N A:ASN529 4.9 24.1 1.0
N A:ILE596 4.9 17.3 1.0
CG2 A:VAL528 4.9 22.0 1.0
CG1 A:ILE682 5.0 18.6 1.0

Potassium binding site 2 out of 2 in 4nmc

Go back to Potassium Binding Sites List in 4nmc
Potassium binding site 2 out of 2 in the Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Oxidized Proline Utilization A (Puta) From Geobacter Sulfurreducens Pca Complexed with Zwittergent 3-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2004

b:17.6
occ:1.00
O B:ILE682 2.6 17.3 1.0
O B:VAL528 2.6 20.9 1.0
O B:GLU595 2.7 18.6 1.0
O B:HOH2359 2.8 28.3 1.0
O B:HOH2137 2.8 16.6 1.0
OG1 B:THR527 3.0 25.6 1.0
CG B:GLU595 3.5 19.8 1.0
N B:VAL528 3.6 20.0 1.0
C B:ILE682 3.7 18.4 1.0
C B:VAL528 3.7 28.5 1.0
C B:GLU595 3.8 16.6 1.0
CB B:ILE682 4.0 25.9 1.0
CA B:ILE682 4.1 20.5 1.0
CA B:VAL528 4.3 26.2 1.0
CB B:THR527 4.3 22.9 1.0
C B:THR527 4.3 21.1 1.0
CA B:GLU595 4.3 17.0 1.0
CA B:THR527 4.4 19.6 1.0
O B:HOH2295 4.4 27.2 1.0
CD B:GLU595 4.5 19.6 1.0
CB B:GLU595 4.5 19.0 1.0
OE2 B:GLU595 4.6 19.3 1.0
CD B:PRO530 4.6 22.7 1.0
CG2 B:ILE682 4.8 23.5 1.0
N B:ASN529 4.8 20.3 1.0
N B:ILE596 4.9 16.0 1.0
N B:THR683 4.9 15.3 1.0
CD1 B:ILE596 4.9 15.2 1.0
O B:HOH2147 5.0 21.6 1.0
CG2 B:VAL528 5.0 25.5 1.0

Reference:

H.Singh, B.W.Arentson, D.F.Becker, J.J.Tanner. Structures of the Puta Peripheral Membrane Flavoenzyme Reveal A Dynamic Substrate-Channeling Tunnel and the Quinone-Binding Site. Proc.Natl.Acad.Sci.Usa V. 111 3389 2014.
ISSN: ISSN 0027-8424
PubMed: 24550478
DOI: 10.1073/PNAS.1321621111
Page generated: Mon Aug 12 11:40:13 2024

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