Potassium in PDB 4kvb: Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17

The structure of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17, PDB code: 4kvb was solved by E.L.Murphy, G.Jogl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.91 / 4.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	397.316, 397.316, 215.505, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 25.8

The structure of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 also contains other interesting chemical elements:

Magnesium	(Mg)	158 atoms
Zinc	(Zn)	2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 35;

Binding sites:

The binding sites of Potassium atom in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 (pdb code 4kvb). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 35 binding sites of Potassium where determined in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17, PDB code: 4kvb:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1752 b:0.3 occ:1.00 O4 A:U304 3.6 0.8 1.0 O6 A:G305 4.0 0.3 1.0 N6 A:A303 4.3 0.4 1.0 O6 A:G293 4.4 0.6 1.0 C4 A:U304 4.8 0.8 1.0 C6 A:G305 5.0 0.8 1.0

Potassium binding site 2 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1753 b:0.3 occ:1.00 O4 A:U133 4.2 0.1 1.0 O6 A:G230 4.2 0.8 1.0 O4 A:U229 4.3 0.6 1.0 K A:K1771 4.4 0.5 1.0 N4 A:C132 4.8 0.6 1.0

Potassium binding site 3 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1754 b:0.7 occ:1.00 O4 A:U863 3.0 0.0 1.0 C4 A:U863 4.0 0.3 1.0 OP1 A:U1078 4.1 0.1 1.0 N3 A:U863 4.4 0.0 1.0 OP1 A:A865 4.8 0.2 1.0 O6 A:G867 4.9 0.9 1.0

Potassium binding site 4 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1755 b:0.5 occ:1.00 O6 A:G895 3.4 0.4 1.0 O6 A:G903 3.9 1.0 1.0 N4 A:C904 4.5 0.6 1.0 C6 A:G895 4.6 0.0 1.0 N4 A:C896 4.7 0.0 1.0 O6 A:G894 4.9 0.7 1.0

Potassium binding site 5 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1756 b:0.5 occ:1.00 OP2 A:G577 3.5 0.4 1.0 OP1 A:G575 3.6 1.0 1.0 OP1 A:G576 4.1 0.9 1.0 O3' A:G575 4.4 0.5 1.0 C5' A:G576 4.5 0.1 1.0 OP2 A:A815 4.6 0.4 1.0 OP1 A:A815 4.7 0.6 1.0 P A:G575 4.8 0.8 1.0 P A:G576 4.9 0.9 1.0 C5' A:G577 4.9 0.2 1.0 P A:G577 4.9 0.8 1.0

Potassium binding site 6 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1757 b:0.9 occ:1.00 O4 A:U1090 3.0 0.4 1.0 C4 A:U1090 4.2 0.8 1.0 O6 A:G1089 4.7 0.2 1.0 N7 A:G1089 4.9 0.4 1.0 C5 A:U1090 4.9 0.7 1.0

Potassium binding site 7 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1758 b:0.6 occ:1.00 O6 A:G837 4.3 0.1 1.0 O4 A:U835 4.8 0.9 1.0

Potassium binding site 8 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1759 b:0.5 occ:1.00 O4 A:U14 3.4 0.9 1.0 OP2 A:U13 3.7 0.6 1.0 OP2 A:U17 4.1 0.1 1.0 C4 A:U14 4.2 0.4 1.0 OP2 A:U12 4.5 0.9 1.0 OP1 A:U17 4.6 0.6 1.0 N3 A:U14 4.7 0.0 1.0 P A:U17 4.9 0.2 1.0 OP1 A:U12 5.0 0.7 1.0

Potassium binding site 9 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1760 b:0.7 occ:1.00 OP2 A:C536 2.9 0.9 1.0 K A:K1763 3.4 0.5 1.0 P A:C536 4.4 0.9 1.0 C5' A:A535 4.6 0.5 1.0 OP1 A:A535 4.7 0.3 1.0 O5' A:C536 4.7 0.7 1.0 OP2 A:G537 4.8 0.1 1.0 N7 A:G537 4.8 0.5 1.0 O6 A:G538 4.8 0.5 1.0 C5 A:C536 4.9 0.4 1.0

Potassium binding site 10 out of 35 in the Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Thermus Thermophilus HB27 30S Ribosomal Subunit Lacking Ribosomal Protein S17 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1761 b:0.7 occ:1.00 O6 A:G664 3.4 0.8 1.0 O6 A:G741 3.9 0.9 1.0 C6 A:G664 4.3 0.7 1.0 O4 A:U740 4.4 0.1 1.0 O6 A:G666 4.5 0.3 1.0 N1 A:G664 4.8 0.7 1.0

J.L.Connetti, E.L.Murphy, A.E.Dahlberg, S.T.Gregory, G.Jogl. Structural Robustness of the Ribosome Inferred From the X-Ray Crystal Structure of A 30S Ribosomal Subunit Lacking Ribosomal Protein S17 To Be Published.