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Potassium in PDB 4iq0: Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine

Protein crystallography data

The structure of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine, PDB code: 4iq0 was solved by C.Chang, C.Hatzos-Skintges, J.Abdullah, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.60 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.915, 152.386, 100.237, 90.00, 103.12, 90.00
R / Rfree (%) 14.6 / 19.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine (pdb code 4iq0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine, PDB code: 4iq0:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 4iq0

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Potassium binding site 1 out of 5 in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K401

b:43.2
occ:1.00
 OE2 B:GLU56 2.6 28.0 1.0
O B:HOH708 2.6 39.7 1.0
O B:HOH622 2.7 26.7 1.0
O B:ALA81 2.9 17.6 1.0
CD B:GLU56 3.4 25.6 1.0
OE1 B:GLU56 3.5 27.3 1.0
C B:ALA81 3.7 14.7 1.0
N B:ALA85 3.8 16.3 1.0
CB B:SER84 3.8 15.5 1.0
CA B:ALA81 3.9 14.5 1.0
CB B:ALA85 3.9 16.5 1.0
C B:SER84 4.1 15.2 1.0
CB B:ALA81 4.1 15.1 1.0
CA B:ALA85 4.2 15.4 1.0
CA B:SER84 4.5 14.9 1.0
O B:SER84 4.5 16.7 1.0
CG B:GLU56 4.8 23.6 1.0
O B:HOH693 4.9 36.0 1.0
OG B:SER84 4.9 18.5 1.0
N B:ALA82 5.0 13.9 1.0

Potassium binding site 2 out of 5 in 4iq0

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Potassium binding site 2 out of 5 in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K402

b:48.6
occ:1.00
 O B:HOH620 2.3 21.2 1.0
O B:HOH663 2.4 32.2 1.0
OG B:SER305 2.9 9.6 1.0
OE1 B:GLU308 3.1 24.4 1.0
CD B:LYS192 3.6 20.3 1.0
N B:SER305 3.6 8.8 1.0
CA B:SER305 3.7 9.7 1.0
CD B:GLU308 3.7 19.3 1.0
OE2 B:GLU308 3.8 26.1 1.0
O B:TYR301 3.8 8.7 1.0
CB B:SER305 3.8 10.1 1.0
CZ B:TYR301 3.9 13.6 1.0
NZ B:LYS192 3.9 25.6 1.0
CE1 B:TYR301 3.9 13.5 1.0
C B:GLY304 4.1 9.5 1.0
CE2 B:TYR301 4.2 13.5 1.0
OH B:TYR301 4.2 17.1 1.0
CD1 B:TYR301 4.3 12.6 1.0
CE B:LYS192 4.4 22.9 1.0
CD2 B:TYR301 4.5 13.6 1.0
O B:GLY304 4.5 8.1 1.0
CG B:TYR301 4.6 12.1 1.0
CA B:GLY304 4.7 10.4 1.0
CG B:LYS192 4.8 18.1 1.0
C B:TYR301 4.9 9.8 1.0
CB B:LYS192 4.9 14.9 1.0
CG B:GLU308 5.0 14.7 1.0

Potassium binding site 3 out of 5 in 4iq0

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Potassium binding site 3 out of 5 in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K401

b:36.7
occ:1.00
 O C:HOH613 2.6 25.2 1.0
O C:HOH604 2.6 13.0 1.0
O C:LEU234 2.8 9.4 1.0
O C:ASN248 2.9 9.3 1.0
O C:HOH571 3.6 19.8 1.0
C C:LEU234 3.7 10.9 1.0
CG2 C:THR249 3.7 10.6 1.0
O C:ASN233 3.9 10.2 1.0
C C:ASN233 3.9 10.2 1.0
C C:ASN248 4.0 9.4 1.0
CA C:THR249 4.1 9.7 1.0
O C:HOH502 4.2 9.8 1.0
N C:LEU234 4.2 10.8 1.0
CB C:THR249 4.3 10.4 1.0
O C:HOH503 4.3 8.6 1.0
CA C:ASN233 4.4 10.6 1.0
N C:PRO235 4.4 10.7 1.0
CA C:PRO235 4.4 10.4 1.0
ND2 C:ASN146 4.4 14.8 1.0
N C:THR249 4.5 9.2 1.0
O C:HOH597 4.6 30.7 1.0
OD1 C:ASN146 4.6 14.6 1.0
CA C:LEU234 4.6 11.4 1.0
O C:SER232 4.6 8.5 1.0
CG C:ASN146 4.9 13.3 1.0
C C:PRO235 5.0 9.9 1.0

Potassium binding site 4 out of 5 in 4iq0

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Potassium binding site 4 out of 5 in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K401

b:36.7
occ:1.00
 O D:HOH610 2.6 27.8 1.0
O D:HOH593 2.7 11.6 1.0
O D:LEU234 2.7 9.7 1.0
O D:ASN248 2.8 8.0 1.0
O D:HOH645 3.5 23.4 1.0
C D:LEU234 3.7 11.6 1.0
CG2 D:THR249 3.8 11.7 1.0
O D:ASN233 3.8 14.2 1.0
C D:ASN233 3.9 11.9 1.0
C D:ASN248 4.0 9.3 1.0
CA D:THR249 4.1 10.1 1.0
N D:LEU234 4.3 11.8 1.0
O D:HOH522 4.3 12.3 1.0
CA D:ASN233 4.3 11.9 1.0
N D:PRO235 4.3 11.1 1.0
CA D:PRO235 4.4 10.8 1.0
CB D:THR249 4.4 11.0 1.0
O D:HOH505 4.4 8.2 1.0
N D:THR249 4.5 8.9 1.0
ND2 D:ASN146 4.6 13.0 1.0
OD1 D:ASN146 4.6 14.2 1.0
O D:HOH601 4.6 19.6 1.0
CA D:LEU234 4.6 11.9 1.0
O D:SER232 4.7 8.9 1.0
C D:PRO235 4.9 10.4 1.0
O D:HOH687 5.0 34.3 1.0

Potassium binding site 5 out of 5 in 4iq0

Go back to Potassium Binding Sites List in 4iq0
Potassium binding site 5 out of 5 in the Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K402

b:38.8
occ:1.00
 OG1 D:THR246 2.4 9.8 1.0
OE2 D:GLU237 2.7 11.3 1.0
O D:HOH595 2.7 22.9 1.0
OD1 B:ASN233 3.1 18.0 1.0
CB D:THR246 3.5 10.9 1.0
CG2 D:THR246 3.6 11.0 1.0
CD D:GLU237 3.6 11.1 1.0
CB B:ASN233 3.7 11.6 1.0
CG D:GLU237 3.8 10.3 1.0
CG B:ASN233 3.8 13.3 1.0
O D:HOH661 4.0 36.5 1.0
O D:HOH503 4.2 14.6 1.0
N B:ASN233 4.2 10.0 1.0
CG2 D:THR244 4.3 10.1 1.0
CA B:ASN233 4.4 10.8 1.0
O D:HOH592 4.6 24.0 1.0
CA D:THR246 4.6 10.3 1.0
C B:ASN233 4.7 10.6 1.0
OE1 D:GLU237 4.8 10.7 1.0

Reference:

C.Chang, C.Hatzos-Skintges, J.Abdullah, A.Joachimiak. Crystal Structure of Oxidoreductase, Gfo/Idh/Moca Family From Streptococcus Pneumoniae with Reductive Methylated Lysine To Be Published.
Page generated: Sun Dec 13 23:31:46 2020

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