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Potassium in PDB 4ip0: X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution

Enzymatic activity of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution

All present enzymatic activity of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution:
2.4.2.3;

Protein crystallography data

The structure of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution, PDB code: 4ip0 was solved by I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, C.Betzel, A.M.Mikhailov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.93 / 1.29
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 63.671, 71.062, 87.908, 69.63, 72.56, 85.73
R / Rfree (%) 17.2 / 20

Other elements in 4ip0:

The structure of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution (pdb code 4ip0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution, PDB code: 4ip0:

Potassium binding site 1 out of 1 in 4ip0

Go back to Potassium Binding Sites List in 4ip0
Potassium binding site 1 out of 1 in the X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K301

b:6.1
occ:0.71
 OE2 D:GLU48 3.0 6.5 1.0
O C:ILE68 3.1 5.0 1.0
O D:ILE68 3.1 5.9 1.0
OG D:SER72 3.1 5.6 1.0
OG C:SER72 3.2 8.6 1.0
OE2 C:GLU48 3.5 19.3 1.0
CB D:SER72 3.6 3.7 1.0
CB C:SER72 3.6 6.6 1.0
N D:ILE68 3.6 3.9 1.0
O C:HOH693 3.6 4.7 0.6
O C:HOH693 3.7 6.5 0.4
N C:ILE68 3.7 3.8 1.0
CD D:GLU48 3.9 7.3 1.0
C D:ILE68 4.0 5.5 1.0
CD C:GLU48 4.0 10.6 1.0
C C:ILE68 4.0 4.3 1.0
CA D:GLY67 4.1 4.5 1.0
C D:GLY67 4.1 4.4 1.0
CG D:GLU48 4.2 6.0 1.0
CA C:GLY67 4.2 3.9 1.0
CG C:GLU48 4.2 6.5 1.0
C C:GLY67 4.2 3.5 1.0
CA D:ILE68 4.3 4.2 1.0
CA C:ILE68 4.4 3.4 1.0
O C:THR66 4.6 4.3 1.0
O D:THR66 4.7 5.1 1.0
CB D:ILE68 4.7 4.5 1.0
OE1 C:GLU48 4.7 8.5 1.0
CB C:GLU48 4.8 5.6 1.0
CA C:SER72 4.8 4.1 1.0
CA D:SER72 4.8 3.1 1.0
CB C:ILE68 4.9 4.3 1.0
N C:SER72 4.9 4.0 1.0
CB D:GLU48 4.9 5.1 1.0
N D:SER72 5.0 3.0 1.0
OE1 D:GLU48 5.0 7.9 1.0

Reference:

I.I.Prokofev, A.A.Lashkov, A.G.Gabdoulkhakov, C.Betzel, A.M.Mikhailov. X-Ray Structure of the Complex Uridine Phosphorylase From Vibrio Cholerae with Phosphate Ion at 1.29 A Resolution To Be Published.
Page generated: Sun Dec 13 23:31:46 2020

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