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Potassium in PDB 4hw8: 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose.

Protein crystallography data

The structure of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose., PDB code: 4hw8 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.86 / 2.25
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 102.363, 102.363, 190.308, 90.00, 90.00, 120.00
R / Rfree (%) 16.6 / 21.5

Other elements in 4hw8:

The structure of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. (pdb code 4hw8). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose., PDB code: 4hw8:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 4hw8

Go back to Potassium Binding Sites List in 4hw8
Potassium binding site 1 out of 4 in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K503

b:47.3
occ:1.00
OG1 A:THR252 2.9 31.3 1.0
O B:HOH617 3.2 28.7 1.0
OE1 B:GLN377 3.5 35.6 1.0
O B:HOH756 3.7 49.2 1.0
CG2 A:THR252 3.8 34.2 1.0
CB A:THR252 3.8 35.6 1.0
O B:HOH655 3.8 30.4 1.0
CG B:GLN377 3.8 31.5 1.0
CA B:GLN377 3.9 31.0 1.0
O B:ARG376 4.1 35.2 1.0
CD B:GLN377 4.1 33.2 1.0
CB A:ASP254 4.1 38.3 1.0
CD1 B:LEU413 4.3 27.5 1.0
CB B:GLN377 4.3 31.6 1.0
CG2 A:VAL255 4.4 30.5 1.0
O A:HOH845 4.5 35.3 1.0
N B:GLN377 4.6 31.6 1.0
C B:ARG376 4.6 35.4 1.0
OD2 A:ASP254 4.7 47.0 1.0
O B:GLN377 4.7 30.7 1.0
C B:GLN377 4.8 30.0 1.0
N A:VAL255 4.9 31.6 1.0
CG A:ASP254 4.9 40.3 1.0

Potassium binding site 2 out of 4 in 4hw8

Go back to Potassium Binding Sites List in 4hw8
Potassium binding site 2 out of 4 in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K504

b:51.0
occ:1.00
OG1 B:THR252 3.0 32.0 1.0
O A:HOH606 3.2 30.7 1.0
OE1 A:GLN377 3.3 37.9 1.0
O A:HOH609 3.7 26.1 1.0
O A:HOH709 3.8 42.7 1.0
CB B:THR252 3.8 31.8 1.0
CG A:GLN377 3.8 33.0 1.0
CG2 B:THR252 3.8 28.6 1.0
CA A:GLN377 3.8 30.0 1.0
O A:ARG376 3.9 33.9 1.0
CD A:GLN377 4.0 36.2 1.0
CB B:ASP254 4.2 38.0 1.0
CD1 A:LEU413 4.3 25.9 1.0
CB A:GLN377 4.3 30.7 1.0
CG2 B:VAL255 4.4 31.0 1.0
N A:GLN377 4.5 30.7 1.0
C A:ARG376 4.5 33.6 1.0
O B:HOH776 4.6 37.5 1.0
OD2 B:ASP254 4.7 48.8 1.0
C A:GLN377 4.7 27.9 1.0
O A:GLN377 4.8 28.2 1.0
N B:VAL255 4.9 31.9 1.0
CG B:ASP254 5.0 41.1 1.0

Potassium binding site 3 out of 4 in 4hw8

Go back to Potassium Binding Sites List in 4hw8
Potassium binding site 3 out of 4 in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K505

b:29.1
occ:0.50
OH A:TYR278 2.9 35.1 1.0
OG1 A:THR270 3.0 27.1 1.0
O A:HOH603 3.0 31.5 1.0
OD1 A:ASN274 3.2 49.2 1.0
CG2 A:THR270 3.6 25.8 1.0
CD1 A:ILE257 3.8 27.9 1.0
CE1 A:HIS253 3.9 29.5 1.0
CB A:THR270 3.9 27.6 1.0
CZ A:TYR278 3.9 35.7 1.0
CG1 A:ILE257 3.9 30.0 1.0
CG A:ASN274 4.0 47.9 1.0
CE2 A:TYR278 4.1 33.8 1.0
CB A:ASN274 4.1 43.0 1.0
CE3 A:TRP273 4.1 32.5 1.0
NE2 A:HIS253 4.2 30.2 1.0
O A:GLY271 4.4 32.2 1.0
CE2 A:PHE268 4.5 26.1 1.0
N A:ASN274 4.5 40.9 1.0
CZ3 A:TRP273 4.6 31.1 1.0
N A:GLY271 4.9 29.6 1.0
CZ A:PHE268 4.9 24.4 1.0
CA A:ASN274 5.0 43.0 1.0
ND1 A:HIS253 5.0 36.3 1.0
CG2 A:ILE257 5.0 26.3 1.0

Potassium binding site 4 out of 4 in 4hw8

Go back to Potassium Binding Sites List in 4hw8
Potassium binding site 4 out of 4 in the 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:30.7
occ:0.50
OG1 B:THR270 2.9 23.8 1.0
OH B:TYR278 3.0 40.7 1.0
O B:HOH607 3.0 32.4 1.0
OD1 B:ASN274 3.1 49.9 1.0
CG2 B:THR270 3.5 24.8 1.0
CB B:THR270 3.8 28.2 1.0
CD1 B:ILE257 3.8 27.6 1.0
CG1 B:ILE257 3.9 30.6 1.0
CZ B:TYR278 3.9 39.1 1.0
CG B:ASN274 3.9 47.1 1.0
CE1 B:HIS253 4.0 32.6 1.0
CB B:ASN274 4.1 43.5 1.0
CE2 B:TYR278 4.1 38.7 1.0
CE3 B:TRP273 4.1 40.1 1.0
O B:GLY271 4.2 32.2 1.0
NE2 B:HIS253 4.3 28.6 1.0
O B:HOH810 4.4 52.9 1.0
N B:ASN274 4.5 42.0 1.0
CE2 B:PHE268 4.5 31.2 1.0
CZ3 B:TRP273 4.7 35.1 1.0
N B:GLY271 4.7 27.1 1.0
CZ B:PHE268 4.9 29.4 1.0
CA B:ASN274 4.9 43.3 1.0
C B:GLY271 5.0 30.5 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, J.Winsor, F.Bagnoli, F.Falugi, M.Bottomley, G.Grandi, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.25 Angstrom Structure of the Extracellular Solute-Binding Protein From Staphylococcus Aureus in Complex with Maltose. To Be Published.
Page generated: Mon Aug 12 10:55:57 2024

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