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Potassium in PDB 4eyv: Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica

Enzymatic activity of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica

All present enzymatic activity of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica:
5.2.1.8;

Protein crystallography data

The structure of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica, PDB code: 4eyv was solved by H.Bhatt, R.K.Pal, N.Tuteja, N.S.Bhavesh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.03 / 1.97
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 121.252, 144.108, 110.735, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.3

Other elements in 4eyv:

The structure of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica also contains other interesting chemical elements:

Sodium (Na) 10 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica (pdb code 4eyv). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica, PDB code: 4eyv:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 4eyv

Go back to Potassium Binding Sites List in 4eyv
Potassium binding site 1 out of 4 in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K201

b:31.8
occ:1.00
 O A:ASN42 2.7 30.1 1.0
O A:HOH376 2.7 42.7 1.0
OG1 A:THR49 2.8 30.8 1.0
O A:SER161 2.8 24.5 1.0
O A:HOH390 2.9 47.3 1.0
O A:ALA40 2.9 24.4 1.0
O A:LYS41 3.1 30.8 1.0
O A:HOH335 3.2 32.4 1.0
C A:LYS41 3.5 30.2 1.0
C A:ASN42 3.7 32.1 1.0
C A:SER161 3.8 25.6 1.0
OG A:SER161 3.8 25.9 1.0
NA A:NA204 3.9 46.5 1.0
CB A:THR49 3.9 27.6 1.0
C A:ALA40 4.0 24.4 1.0
CA A:LYS41 4.0 29.2 1.0
N A:ASN42 4.2 29.5 1.0
N A:SER161 4.3 24.4 1.0
CA A:SER161 4.5 24.4 1.0
N A:LYS41 4.5 25.6 1.0
CA A:ASN42 4.5 30.8 1.0
CG2 A:THR49 4.5 26.6 1.0
N A:PRO43 4.6 34.1 1.0
O A:HOH400 4.6 52.1 1.0
N A:GLY162 4.7 25.9 1.0
CA A:PRO43 4.7 35.0 1.0
CB A:SER161 4.7 23.0 1.0
CA A:GLY162 4.8 27.5 1.0
O A:HOH371 4.9 45.6 1.0

Potassium binding site 2 out of 4 in 4eyv

Go back to Potassium Binding Sites List in 4eyv
Potassium binding site 2 out of 4 in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K202

b:32.8
occ:1.00
 O B:ASN42 2.6 31.1 1.0
O B:SER161 2.7 26.7 1.0
OG1 B:THR49 2.7 30.4 1.0
O B:HOH388 2.8 46.0 1.0
O B:ALA40 2.9 24.9 1.0
O B:LYS41 3.2 32.1 1.0
O B:HOH333 3.2 33.3 1.0
O B:HOH389 3.3 51.2 1.0
O B:HOH337 3.5 24.0 0.5
C B:LYS41 3.6 31.2 1.0
C B:ASN42 3.7 32.2 1.0
OG B:SER161 3.8 27.6 1.0
C B:SER161 3.8 26.5 1.0
CB B:THR49 3.9 28.3 1.0
C B:ALA40 4.0 24.6 1.0
CA B:LYS41 4.1 29.6 1.0
O B:HOH459 4.1 59.6 1.0
N B:ASN42 4.2 29.7 1.0
N B:SER161 4.2 26.1 1.0
O B:HOH337 4.5 27.3 0.5
CA B:SER161 4.5 25.8 1.0
N B:LYS41 4.5 27.0 1.0
CG2 B:THR49 4.5 27.4 1.0
CA B:ASN42 4.6 30.9 1.0
N B:PRO43 4.6 33.9 1.0
N B:GLY162 4.7 26.4 1.0
CA B:PRO43 4.7 34.7 1.0
CB B:SER161 4.7 23.9 1.0
CA B:GLY162 4.8 28.8 1.0
O B:HOH364 5.0 42.9 1.0

Potassium binding site 3 out of 4 in 4eyv

Go back to Potassium Binding Sites List in 4eyv
Potassium binding site 3 out of 4 in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K201

b:43.6
occ:0.50
 O C:HOH433 1.4 27.2 1.0
O C:HOH430 2.8 43.5 1.0
NE C:ARG55 2.8 23.6 1.0
NH2 C:ARG55 3.4 21.4 1.0
O C:HOH416 3.5 32.5 0.5
CZ C:ARG55 3.6 22.9 1.0
O C:SER149 3.6 25.3 1.0
CD C:ARG55 3.9 23.9 1.0
CG C:ARG55 4.2 20.8 1.0
CD1 C:ILE57 4.4 23.4 1.0
C C:SER149 4.5 23.6 1.0
O C:HOH406 4.6 49.1 1.0
CA C:GLY150 4.8 22.9 1.0
NH1 C:ARG55 4.9 21.6 1.0

Potassium binding site 4 out of 4 in 4eyv

Go back to Potassium Binding Sites List in 4eyv
Potassium binding site 4 out of 4 in the Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Cyclophilin A Like Protein From Piriformospora Indica within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K202

b:33.6
occ:1.00
 O C:HOH393 2.6 50.3 1.0
O C:ASN42 2.7 31.4 1.0
OG1 C:THR49 2.8 30.6 1.0
O C:SER161 2.8 25.8 1.0
O C:ALA40 2.9 25.7 1.0
O C:HOH429 2.9 45.2 1.0
O C:LYS41 3.2 30.7 1.0
O C:HOH331 3.2 31.7 1.0
C C:LYS41 3.6 30.5 1.0
OG C:SER161 3.7 26.5 1.0
C C:ASN42 3.8 32.1 1.0
C C:SER161 3.8 25.9 1.0
O C:HOH327 3.8 36.5 1.0
CB C:THR49 3.9 28.1 1.0
CA C:LYS41 4.1 29.7 1.0
C C:ALA40 4.1 25.4 1.0
N C:ASN42 4.2 30.2 1.0
N C:SER161 4.2 25.9 1.0
CA C:SER161 4.5 25.2 1.0
CG2 C:THR49 4.5 26.5 1.0
N C:LYS41 4.6 27.5 1.0
CA C:ASN42 4.6 30.4 1.0
N C:PRO43 4.6 33.3 1.0
CA C:PRO43 4.7 35.5 1.0
CB C:SER161 4.7 23.2 1.0
N C:GLY162 4.7 26.5 1.0
CA C:GLY162 4.7 30.1 1.0
O C:HOH372 4.9 49.0 1.0

Reference:

D.K.Trivedi, H.Bhatt, R.K.Pal, R.Tuteja, B.Garg, A.K.Johri, N.S.Bhavesh, N.Tuteja. Structure of Rna-Interacting Cyclophilin A-Like Protein From Piriformospora Indica That Provides Salinity-Stress Tolerance in Plants Sci Rep V. 3 3001 2013.
ISSN: ESSN 2045-2322
PubMed: 24141523
DOI: 10.1038/SREP03001
Page generated: Mon Aug 12 10:41:04 2024

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