Potassium in PDB 4egu: 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile
Protein crystallography data
The structure of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile, PDB code: 4egu
was solved by
S.M.Anderson,
Z.Wawrzak,
M.Kudritska,
S.N.Peterson,
W.F.Anderson,
A.Savchenko,
Center For Structural Genomics Of Infectious Diseases(Csgid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
0.95
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
38.065,
65.848,
89.041,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.6 /
15.2
|
Other elements in 4egu:
The structure of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile
(pdb code 4egu). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile, PDB code: 4egu:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 4egu
Go back to
Potassium Binding Sites List in 4egu
Potassium binding site 1 out
of 2 in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K203
b:11.4
occ:1.00
|
H
|
A:HIS102
|
2.5
|
9.5
|
1.0
|
HA
|
A:LEU101
|
2.6
|
10.8
|
1.0
|
HE21
|
A:GLN96
|
2.7
|
15.6
|
1.0
|
HD22
|
A:ASN88
|
2.7
|
11.5
|
1.0
|
O
|
A:HOH301
|
3.1
|
10.2
|
1.0
|
HD12
|
A:LEU101
|
3.2
|
13.8
|
1.0
|
O
|
A:HOH302
|
3.2
|
10.6
|
1.0
|
NE2
|
A:GLN96
|
3.2
|
13.0
|
1.0
|
N
|
A:HIS102
|
3.3
|
7.9
|
1.0
|
HD1
|
A:HIS102
|
3.4
|
11.5
|
0.8
|
ND2
|
A:ASN88
|
3.4
|
9.6
|
1.0
|
HA
|
A:SER51
|
3.4
|
11.4
|
1.0
|
ND1
|
A:HIS102
|
3.4
|
9.6
|
0.8
|
CA
|
A:LEU101
|
3.5
|
9.0
|
1.0
|
O
|
A:ASN89
|
3.5
|
10.3
|
1.0
|
HG3
|
A:GLN96
|
3.5
|
13.4
|
1.0
|
HE22
|
A:GLN96
|
3.5
|
15.6
|
1.0
|
CE1
|
A:HIS102
|
3.6
|
9.5
|
0.8
|
HE1
|
A:HIS102
|
3.6
|
11.4
|
0.8
|
HD21
|
A:ASN88
|
3.7
|
11.5
|
1.0
|
O
|
A:HIS102
|
3.8
|
8.7
|
1.0
|
C
|
A:LEU101
|
3.8
|
8.0
|
1.0
|
O
|
A:HIS100
|
3.9
|
9.2
|
1.0
|
CD
|
A:GLN96
|
4.0
|
12.0
|
1.0
|
N
|
A:LEU101
|
4.1
|
8.6
|
1.0
|
CG
|
A:HIS102
|
4.1
|
8.6
|
0.8
|
CD1
|
A:LEU101
|
4.1
|
11.5
|
1.0
|
C
|
A:HIS100
|
4.2
|
8.4
|
1.0
|
CG
|
A:GLN96
|
4.2
|
11.2
|
1.0
|
NE2
|
A:HIS102
|
4.3
|
9.5
|
0.8
|
CG
|
A:ASN88
|
4.3
|
8.5
|
1.0
|
H
|
A:LEU52
|
4.3
|
11.1
|
1.0
|
CA
|
A:HIS102
|
4.4
|
8.2
|
1.0
|
CA
|
A:SER51
|
4.4
|
9.5
|
1.0
|
H
|
A:ASN89
|
4.4
|
9.8
|
1.0
|
OD1
|
A:ASN88
|
4.4
|
11.0
|
1.0
|
HG
|
A:LEU101
|
4.5
|
12.5
|
1.0
|
C
|
A:HIS102
|
4.5
|
7.6
|
1.0
|
CB
|
A:LEU101
|
4.5
|
10.1
|
1.0
|
CD2
|
A:HIS102
|
4.6
|
9.3
|
0.8
|
HB2
|
A:SER51
|
4.6
|
13.1
|
1.0
|
HD13
|
A:LEU101
|
4.6
|
13.8
|
1.0
|
HA
|
A:CYS90
|
4.6
|
12.3
|
1.0
|
C
|
A:ASN89
|
4.6
|
9.3
|
1.0
|
HD11
|
A:LEU101
|
4.6
|
13.8
|
1.0
|
CG
|
A:LEU101
|
4.7
|
10.4
|
1.0
|
H
|
A:LEU101
|
4.7
|
10.3
|
1.0
|
H
|
A:HIS100
|
4.7
|
11.3
|
1.0
|
O
|
A:VAL98
|
4.7
|
10.3
|
1.0
|
HG2
|
A:GLN96
|
4.7
|
13.4
|
1.0
|
O
|
A:ASP50
|
4.8
|
11.5
|
1.0
|
HB2
|
A:LEU101
|
4.8
|
12.1
|
1.0
|
CB
|
A:HIS102
|
4.8
|
9.4
|
0.8
|
N
|
A:LEU52
|
4.9
|
9.2
|
1.0
|
CB
|
A:SER51
|
5.0
|
10.9
|
1.0
|
N
|
A:ASN89
|
5.0
|
8.1
|
1.0
|
|
Potassium binding site 2 out
of 2 in 4egu
Go back to
Potassium Binding Sites List in 4egu
Potassium binding site 2 out
of 2 in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K203
b:10.4
occ:1.00
|
H
|
B:HIS102
|
2.5
|
9.8
|
1.0
|
HA
|
B:LEU101
|
2.6
|
10.1
|
1.0
|
HD22
|
B:ASN88
|
2.7
|
11.4
|
1.0
|
HE21
|
B:GLN96
|
2.9
|
13.5
|
1.0
|
O
|
B:HOH301
|
3.1
|
9.6
|
1.0
|
O
|
B:HOH303
|
3.2
|
10.2
|
1.0
|
HD12
|
B:LEU101
|
3.2
|
12.2
|
1.0
|
N
|
B:HIS102
|
3.3
|
8.2
|
1.0
|
NE2
|
B:GLN96
|
3.3
|
11.2
|
1.0
|
ND2
|
B:ASN88
|
3.4
|
9.5
|
1.0
|
HD1
|
B:HIS102
|
3.4
|
11.9
|
1.0
|
ND1
|
B:HIS102
|
3.4
|
9.9
|
1.0
|
HA
|
B:SER51
|
3.4
|
11.4
|
1.0
|
CA
|
B:LEU101
|
3.5
|
8.4
|
1.0
|
CE1
|
B:HIS102
|
3.5
|
10.4
|
1.0
|
HE22
|
B:GLN96
|
3.5
|
13.5
|
1.0
|
HG3
|
B:GLN96
|
3.5
|
12.3
|
1.0
|
O
|
B:ASN89
|
3.6
|
9.5
|
1.0
|
HE1
|
B:HIS102
|
3.6
|
12.5
|
1.0
|
HD21
|
B:ASN88
|
3.7
|
11.4
|
1.0
|
O
|
B:HIS102
|
3.8
|
8.7
|
1.0
|
C
|
B:LEU101
|
3.9
|
8.2
|
1.0
|
O
|
B:HIS100
|
3.9
|
9.3
|
1.0
|
CD
|
B:GLN96
|
4.0
|
10.1
|
1.0
|
CG
|
B:HIS102
|
4.1
|
9.2
|
1.0
|
N
|
B:LEU101
|
4.1
|
8.7
|
1.0
|
CD1
|
B:LEU101
|
4.2
|
10.2
|
1.0
|
NE2
|
B:HIS102
|
4.2
|
10.1
|
1.0
|
C
|
B:HIS100
|
4.2
|
9.1
|
1.0
|
CG
|
B:GLN96
|
4.2
|
10.3
|
1.0
|
CG
|
B:ASN88
|
4.3
|
8.1
|
1.0
|
H
|
B:LEU52
|
4.3
|
10.2
|
1.0
|
CA
|
B:HIS102
|
4.3
|
8.3
|
1.0
|
OD1
|
B:ASN88
|
4.4
|
9.4
|
1.0
|
CA
|
B:SER51
|
4.4
|
9.5
|
1.0
|
HB2
|
B:SER51
|
4.5
|
12.0
|
1.0
|
CD2
|
B:HIS102
|
4.5
|
9.6
|
1.0
|
C
|
B:HIS102
|
4.5
|
7.6
|
1.0
|
H
|
B:ASN89
|
4.5
|
9.2
|
1.0
|
HG
|
B:LEU101
|
4.5
|
11.3
|
1.0
|
CB
|
B:LEU101
|
4.6
|
8.9
|
1.0
|
HA
|
B:CYS90
|
4.6
|
10.5
|
1.0
|
HD13
|
B:LEU101
|
4.6
|
12.2
|
1.0
|
HD11
|
B:LEU101
|
4.6
|
12.2
|
1.0
|
HE2
|
B:HIS102
|
4.6
|
12.1
|
1.0
|
C
|
B:ASN89
|
4.7
|
8.3
|
1.0
|
O
|
B:VAL98
|
4.7
|
9.6
|
1.0
|
CG
|
B:LEU101
|
4.7
|
9.4
|
1.0
|
H
|
B:HIS100
|
4.7
|
11.6
|
1.0
|
HG2
|
B:GLN96
|
4.7
|
12.3
|
1.0
|
H
|
B:LEU101
|
4.7
|
10.4
|
1.0
|
CB
|
B:HIS102
|
4.8
|
9.3
|
1.0
|
O
|
B:ASP50
|
4.8
|
11.0
|
1.0
|
N
|
B:LEU52
|
4.8
|
8.5
|
1.0
|
HB2
|
B:LEU101
|
4.8
|
10.6
|
1.0
|
OE1
|
B:GLN96
|
4.9
|
13.6
|
1.0
|
CB
|
B:SER51
|
4.9
|
10.0
|
1.0
|
|
Reference:
S.M.Anderson,
Z.Wawrzak,
M.Kudritska,
S.N.Peterson,
W.F.Anderson,
A.Savchenko.
0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile To Be Published.
Page generated: Mon Aug 12 10:39:31 2024
|