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Potassium in PDB 4egu: 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile

Protein crystallography data

The structure of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile, PDB code: 4egu was solved by S.M.Anderson, Z.Wawrzak, M.Kudritska, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 0.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 38.065, 65.848, 89.041, 90.00, 90.00, 90.00
R / Rfree (%) 13.6 / 15.2

Other elements in 4egu:

The structure of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile (pdb code 4egu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile, PDB code: 4egu:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 4egu

Go back to Potassium Binding Sites List in 4egu
Potassium binding site 1 out of 2 in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K203

b:11.4
occ:1.00
H A:HIS102 2.5 9.5 1.0
HA A:LEU101 2.6 10.8 1.0
HE21 A:GLN96 2.7 15.6 1.0
HD22 A:ASN88 2.7 11.5 1.0
O A:HOH301 3.1 10.2 1.0
HD12 A:LEU101 3.2 13.8 1.0
O A:HOH302 3.2 10.6 1.0
NE2 A:GLN96 3.2 13.0 1.0
N A:HIS102 3.3 7.9 1.0
HD1 A:HIS102 3.4 11.5 0.8
ND2 A:ASN88 3.4 9.6 1.0
HA A:SER51 3.4 11.4 1.0
ND1 A:HIS102 3.4 9.6 0.8
CA A:LEU101 3.5 9.0 1.0
O A:ASN89 3.5 10.3 1.0
HG3 A:GLN96 3.5 13.4 1.0
HE22 A:GLN96 3.5 15.6 1.0
CE1 A:HIS102 3.6 9.5 0.8
HE1 A:HIS102 3.6 11.4 0.8
HD21 A:ASN88 3.7 11.5 1.0
O A:HIS102 3.8 8.7 1.0
C A:LEU101 3.8 8.0 1.0
O A:HIS100 3.9 9.2 1.0
CD A:GLN96 4.0 12.0 1.0
N A:LEU101 4.1 8.6 1.0
CG A:HIS102 4.1 8.6 0.8
CD1 A:LEU101 4.1 11.5 1.0
C A:HIS100 4.2 8.4 1.0
CG A:GLN96 4.2 11.2 1.0
NE2 A:HIS102 4.3 9.5 0.8
CG A:ASN88 4.3 8.5 1.0
H A:LEU52 4.3 11.1 1.0
CA A:HIS102 4.4 8.2 1.0
CA A:SER51 4.4 9.5 1.0
H A:ASN89 4.4 9.8 1.0
OD1 A:ASN88 4.4 11.0 1.0
HG A:LEU101 4.5 12.5 1.0
C A:HIS102 4.5 7.6 1.0
CB A:LEU101 4.5 10.1 1.0
CD2 A:HIS102 4.6 9.3 0.8
HB2 A:SER51 4.6 13.1 1.0
HD13 A:LEU101 4.6 13.8 1.0
HA A:CYS90 4.6 12.3 1.0
C A:ASN89 4.6 9.3 1.0
HD11 A:LEU101 4.6 13.8 1.0
CG A:LEU101 4.7 10.4 1.0
H A:LEU101 4.7 10.3 1.0
H A:HIS100 4.7 11.3 1.0
O A:VAL98 4.7 10.3 1.0
HG2 A:GLN96 4.7 13.4 1.0
O A:ASP50 4.8 11.5 1.0
HB2 A:LEU101 4.8 12.1 1.0
CB A:HIS102 4.8 9.4 0.8
N A:LEU52 4.9 9.2 1.0
CB A:SER51 5.0 10.9 1.0
N A:ASN89 5.0 8.1 1.0

Potassium binding site 2 out of 2 in 4egu

Go back to Potassium Binding Sites List in 4egu
Potassium binding site 2 out of 2 in the 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K203

b:10.4
occ:1.00
H B:HIS102 2.5 9.8 1.0
HA B:LEU101 2.6 10.1 1.0
HD22 B:ASN88 2.7 11.4 1.0
HE21 B:GLN96 2.9 13.5 1.0
O B:HOH301 3.1 9.6 1.0
O B:HOH303 3.2 10.2 1.0
HD12 B:LEU101 3.2 12.2 1.0
N B:HIS102 3.3 8.2 1.0
NE2 B:GLN96 3.3 11.2 1.0
ND2 B:ASN88 3.4 9.5 1.0
HD1 B:HIS102 3.4 11.9 1.0
ND1 B:HIS102 3.4 9.9 1.0
HA B:SER51 3.4 11.4 1.0
CA B:LEU101 3.5 8.4 1.0
CE1 B:HIS102 3.5 10.4 1.0
HE22 B:GLN96 3.5 13.5 1.0
HG3 B:GLN96 3.5 12.3 1.0
O B:ASN89 3.6 9.5 1.0
HE1 B:HIS102 3.6 12.5 1.0
HD21 B:ASN88 3.7 11.4 1.0
O B:HIS102 3.8 8.7 1.0
C B:LEU101 3.9 8.2 1.0
O B:HIS100 3.9 9.3 1.0
CD B:GLN96 4.0 10.1 1.0
CG B:HIS102 4.1 9.2 1.0
N B:LEU101 4.1 8.7 1.0
CD1 B:LEU101 4.2 10.2 1.0
NE2 B:HIS102 4.2 10.1 1.0
C B:HIS100 4.2 9.1 1.0
CG B:GLN96 4.2 10.3 1.0
CG B:ASN88 4.3 8.1 1.0
H B:LEU52 4.3 10.2 1.0
CA B:HIS102 4.3 8.3 1.0
OD1 B:ASN88 4.4 9.4 1.0
CA B:SER51 4.4 9.5 1.0
HB2 B:SER51 4.5 12.0 1.0
CD2 B:HIS102 4.5 9.6 1.0
C B:HIS102 4.5 7.6 1.0
H B:ASN89 4.5 9.2 1.0
HG B:LEU101 4.5 11.3 1.0
CB B:LEU101 4.6 8.9 1.0
HA B:CYS90 4.6 10.5 1.0
HD13 B:LEU101 4.6 12.2 1.0
HD11 B:LEU101 4.6 12.2 1.0
HE2 B:HIS102 4.6 12.1 1.0
C B:ASN89 4.7 8.3 1.0
O B:VAL98 4.7 9.6 1.0
CG B:LEU101 4.7 9.4 1.0
H B:HIS100 4.7 11.6 1.0
HG2 B:GLN96 4.7 12.3 1.0
H B:LEU101 4.7 10.4 1.0
CB B:HIS102 4.8 9.3 1.0
O B:ASP50 4.8 11.0 1.0
N B:LEU52 4.8 8.5 1.0
HB2 B:LEU101 4.8 10.6 1.0
OE1 B:GLN96 4.9 13.6 1.0
CB B:SER51 4.9 10.0 1.0

Reference:

S.M.Anderson, Z.Wawrzak, M.Kudritska, S.N.Peterson, W.F.Anderson, A.Savchenko. 0.95A Resolution Structure of A Histidine Triad Protein From Clostridium Difficile To Be Published.
Page generated: Mon Aug 12 10:39:31 2024

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