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Potassium in PDB 4cqf: Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Protein crystallography data
The structure of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor, PDB code: 4cqf
was solved by
M.Marek,
C.Romier,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 32.89 / 2.30 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 70.778, 70.815, 98.024, 77.79, 75.45, 85.40 |
| R / Rfree (%) | 19 / 23.23 |
Other elements in 4cqf:
The structure of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor also contains other interesting chemical elements:
| Zinc | (Zn) | 4 atoms |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
(pdb code 4cqf). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor, PDB code: 4cqf:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Potassium where determined in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor, PDB code: 4cqf:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Potassium binding site 1 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 1 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 2 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 2 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 3 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 3 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 4 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 4 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 5 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 5 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 6 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 6 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 7 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 7 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Potassium binding site 8 out of 8 in 4cqf
Go back to
Potassium Binding Sites List in 4cqf
Potassium binding site 8 out
of 8 in the Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of Schistosoma Mansoni HDAC8 Complexed with A Mercaptoacetamide Inhibitor within 5.0Å range:
|
Reference:
D.A.Stolfa,
M.Marek,
J.Lancelot,
A.T.Hauser,
A.Walter,
E.Leproult,
J.Melesina,
T.Rumpf,
J.M.Wurtz,
J.Cavarelli,
W.Sippl,
R.J.Pierce,
C.Romier,
M.Jung.
Molecular Basis For the Anti-Parasitic Activity of A Mercaptoacetamide Derivative That Inhibits Histone Deacetylase 8 (HDAC8) From the Human Pathogen Schistosoma Mansoni J.Mol.Biol. V. 426 3442 2014.
ISSN: ISSN 0022-2836
PubMed: 24657767
DOI: 10.1016/J.JMB.2014.03.007
Page generated: Sun Dec 13 23:29:56 2020
ISSN: ISSN 0022-2836
PubMed: 24657767
DOI: 10.1016/J.JMB.2014.03.007
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