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Potassium in PDB 4bew: Serca Bound to Phosphate Analogue

Enzymatic activity of Serca Bound to Phosphate Analogue

All present enzymatic activity of Serca Bound to Phosphate Analogue:
3.6.3.8;

Protein crystallography data

The structure of Serca Bound to Phosphate Analogue, PDB code: 4bew was solved by N.D.Drachmann, D.Mattle, M.Laursen, M.Bublitz, C.Olesen, J.V.Moeller, P.Nissen, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.972 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 101.430, 108.870, 274.310, 90.00, 90.00, 90.00
R / Rfree (%) 16.87 / 20.74

Other elements in 4bew:

The structure of Serca Bound to Phosphate Analogue also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 4 atoms
Manganese (Mn) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Serca Bound to Phosphate Analogue (pdb code 4bew). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Serca Bound to Phosphate Analogue, PDB code: 4bew:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 4bew

Go back to Potassium Binding Sites List in 4bew
Potassium binding site 1 out of 2 in the Serca Bound to Phosphate Analogue


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Serca Bound to Phosphate Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1004

b:79.0
occ:1.00
O A:ALA714 2.7 53.6 1.0
O A:LYS712 2.8 47.2 1.0
O A:LEU711 2.9 48.9 1.0
OE1 A:GLU732 2.9 62.4 1.0
OE2 A:GLU732 3.0 64.0 1.0
O A:HOH2260 3.2 66.0 1.0
O A:HOH2265 3.3 74.3 1.0
CD A:GLU732 3.3 61.7 1.0
C A:LYS712 3.5 43.0 1.0
CA A:LYS712 3.7 49.8 1.0
O A:HOH2259 3.9 85.3 1.0
C A:ALA714 3.9 55.5 1.0
C A:LEU711 3.9 42.8 1.0
O A:GLU715 4.0 58.5 1.0
N A:GLY717 4.0 42.7 1.0
C A:GLU715 4.3 52.7 1.0
N A:LYS712 4.3 38.2 1.0
N A:ALA714 4.4 43.9 1.0
N A:LYS713 4.5 41.9 1.0
O A:ALA730 4.6 56.3 1.0
C A:ILE716 4.6 48.6 1.0
CA A:GLY717 4.6 39.9 1.0
CA A:ALA714 4.6 51.2 1.0
N A:ILE716 4.6 52.8 1.0
CA A:ILE716 4.7 51.1 1.0
C A:LYS713 4.7 44.8 1.0
CG A:GLU732 4.7 56.1 1.0
N A:GLU715 4.9 54.7 1.0
CA A:GLU715 4.9 51.2 1.0
CB A:LYS712 5.0 56.5 1.0

Potassium binding site 2 out of 2 in 4bew

Go back to Potassium Binding Sites List in 4bew
Potassium binding site 2 out of 2 in the Serca Bound to Phosphate Analogue


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Serca Bound to Phosphate Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1004

b:84.8
occ:1.00
O B:ALA714 2.7 54.6 1.0
O B:LYS712 2.8 58.0 1.0
OE2 B:GLU732 2.9 72.0 1.0
O B:LEU711 3.1 55.0 1.0
OE1 B:GLU732 3.4 73.7 1.0
C B:LYS712 3.5 50.0 1.0
CD B:GLU732 3.5 64.5 1.0
O B:HOH2086 3.6 76.3 1.0
CA B:LYS712 3.8 55.5 1.0
C B:ALA714 3.9 53.3 1.0
O B:GLU715 4.0 59.2 1.0
C B:LEU711 4.1 47.9 1.0
C B:GLU715 4.3 56.2 1.0
N B:GLY717 4.3 45.2 1.0
N B:ALA714 4.4 48.6 1.0
N B:LYS712 4.5 50.6 1.0
N B:LYS713 4.6 45.2 1.0
N B:ILE716 4.6 54.9 1.0
CA B:ILE716 4.7 49.3 1.0
CA B:ALA714 4.7 46.8 1.0
C B:LYS713 4.7 51.4 1.0
O B:ALA730 4.7 54.8 1.0
C B:ILE716 4.8 53.8 1.0
N B:GLU715 4.8 52.8 1.0
CA B:GLU715 4.8 52.3 1.0
CG B:GLU732 5.0 49.8 1.0

Reference:

D.Mattle, N.D.Drachmann, X.Y.Liu, P.Gourdon, B.P.Pedersen, P.Morth, J.Wang, P.Nissen. Serca Bound to Phosphate Analogue To Be Published.
Page generated: Mon Aug 12 10:09:50 2024

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