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Potassium in PDB 3x41: Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide

Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide

All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide:
1.4.3.21;

Protein crystallography data

The structure of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide, PDB code: 3x41 was solved by T.Okajima, S.Nakanishi, T.Murakawa, M.Kataoka, H.Hayashi, A.Hamaguchi, T.Nakai, Y.Kawano, H.Yamaguchi, K.Tanizawa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.88 / 1.87
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 191.619, 63.290, 157.851, 90.00, 117.21, 90.00
R / Rfree (%) 15.1 / 18

Other elements in 3x41:

The structure of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide also contains other interesting chemical elements:

Bromine (Br) 8 atoms
Copper (Cu) 2 atoms
Sodium (Na) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide (pdb code 3x41). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide, PDB code: 3x41:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 3x41

Go back to Potassium Binding Sites List in 3x41
Potassium binding site 1 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K706

b:34.4
occ:1.00
 O A:VAL79 2.6 30.3 1.0
O A:HOH1165 2.7 42.5 1.0
O A:THR80 3.2 34.0 1.0
C A:THR80 3.7 34.0 1.0
C A:VAL79 3.8 30.0 1.0
N A:GLY82 4.2 28.0 1.0
CA A:THR80 4.2 31.3 1.0
OE1 A:GLU22 4.3 42.3 1.0
N A:ASN81 4.3 28.2 1.0
N A:THR80 4.5 29.8 1.0
C A:ASN81 4.5 30.0 1.0
CG A:GLU22 4.5 37.7 1.0
CA A:ASN81 4.7 34.1 1.0
CA A:GLY82 4.7 27.9 1.0
CD A:GLU22 4.7 41.2 1.0
CA A:VAL79 4.9 28.8 1.0

Potassium binding site 2 out of 2 in 3x41

Go back to Potassium Binding Sites List in 3x41
Potassium binding site 2 out of 2 in the Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Copper Amine Oxidase From Arthrobacter Globiformis: Product Schiff- Base Form Produced By Anaerobic Reduction in the Presence of Sodium Bromide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K708

b:28.4
occ:1.00
 O B:VAL79 2.5 22.3 1.0
O B:HOH1338 2.6 30.9 1.0
O B:HOH952 2.7 30.4 1.0
O B:THR80 3.1 26.4 1.0
C B:THR80 3.6 26.4 1.0
C B:VAL79 3.7 21.1 1.0
N B:GLY82 4.0 21.9 1.0
CA B:THR80 4.2 23.5 1.0
OE1 B:GLU22 4.2 29.4 1.0
CG B:GLU22 4.3 30.6 1.0
CA B:GLY82 4.4 21.7 1.0
N B:ASN81 4.4 25.2 1.0
N B:THR80 4.4 21.6 1.0
C B:ASN81 4.5 22.7 1.0
O B:HOH1211 4.5 37.9 1.0
CD B:GLU22 4.6 31.5 1.0
CA B:VAL79 4.8 20.7 1.0
CA B:ASN81 4.8 26.9 1.0

Reference:

T.Murakawa, A.Hamaguchi, S.Nakanishi, M.Kataoka, T.Nakai, Y.Kawano, H.Yamaguchi, H.Hayashi, K.Tanizawa, T.Okajima. Probing the Catalytic Mechanism of Copper Amine Oxidase From Arthrobacter Globiformis with Halide Ions J.Biol.Chem. 2015.
ISSN: ESSN 1083-351X
DOI: 10.1074/JBC.M115.662726
Page generated: Sun Dec 13 23:25:24 2020

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