Potassium in PDB 3wru: Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group

The structure of Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group, PDB code: 3wru was solved by J.P.Maianti, H.Kanazawa, P.Dozzo, L.A.Feeney, E.S.Armstrong, J.Kondo, S.Hanessian, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.70 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.554, 32.602, 51.413, 90.00, 108.50, 90.00
R / Rfree (%)	24.9 / 26.2

The structure of Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group also contains other interesting chemical elements:

Fluorine

(F)

2 atoms

The binding sites of Potassium atom in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group (pdb code 3wru). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group, PDB code: 3wru:

Potassium binding site 1 out of 1 in the Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Bacterial Ribosomal Decoding Site in Complex with Synthetic Aminoglycoside with F-Haba Group within 5.0Å range: probe atom residue distance (Å) B Occ B:K102 b:67.0 occ:1.00 O B:HOH229 3.1 58.1 1.0 O A:HOH220 3.1 51.7 1.0 O A:HOH203 3.2 26.7 1.0 O A:HOH213 3.2 43.4 1.0 O6 B:G37 3.2 35.2 1.0 N7 B:G37 3.9 34.8 1.0 C6 B:G37 4.1 34.9 1.0 C5 B:G37 4.4 34.4 1.0 N4 B:C38 4.5 27.9 1.0 N4 A:C11 4.9 30.6 1.0 O6 B:G36 4.9 43.3 1.0

J.P.Maianti, H.Kanazawa, P.Dozzo, R.D.Matias, L.A.Feeney, E.S.Armstrong, D.J.Hildebrandt, T.R.Kane, M.J.Gliedt, A.A.Goldblum, M.S.Linsell, J.B.Aggen, J.Kondo, S.Hanessian. Toxicity Modulation, Resistance Enzyme Evasion, and A-Site X-Ray Structure of Broad-Spectrum Antibacterial Neomycin Analogs Acs Chem.Biol. V. 9 2067 2014.
ISSN: ISSN 1554-8929
PubMed: 25019242
DOI: 10.1021/CB5003416