Potassium in PDB 3vux: Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II
Protein crystallography data
The structure of Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II, PDB code: 3vux
was solved by
H.Nishimasu,
R.Ishitani,
O.Nureki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.99 /
1.70
|
Space group
|
P 31
|
Cell size a, b, c (Å), α, β, γ (°)
|
62.329,
62.329,
85.180,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
16.5 /
20.3
|
Other elements in 3vux:
The structure of Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II
(pdb code 3vux). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the
Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II, PDB code: 3vux:
Jump to Potassium binding site number:
1;
2;
3;
Potassium binding site 1 out
of 3 in 3vux
Go back to
Potassium Binding Sites List in 3vux
Potassium binding site 1 out
of 3 in the Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K802
b:34.6
occ:1.00
|
O
|
E:ALA764
|
2.4
|
28.0
|
1.0
|
O
|
E:CYS762
|
2.6
|
23.8
|
1.0
|
O
|
E:CYS767
|
2.7
|
24.9
|
1.0
|
C
|
E:ALA764
|
3.6
|
29.1
|
1.0
|
C
|
E:CYS767
|
3.7
|
25.4
|
1.0
|
C
|
E:CYS762
|
3.8
|
22.4
|
1.0
|
N
|
E:CYS767
|
3.8
|
23.4
|
1.0
|
O
|
E:HOH910
|
3.9
|
49.5
|
1.0
|
O
|
E:HOH920
|
4.0
|
64.2
|
1.0
|
N
|
E:ALA766
|
4.1
|
31.3
|
1.0
|
CA
|
E:CYS767
|
4.2
|
22.2
|
1.0
|
C
|
E:ARG763
|
4.3
|
24.8
|
1.0
|
N
|
E:ALA764
|
4.3
|
23.7
|
1.0
|
N
|
E:PRO765
|
4.4
|
33.5
|
1.0
|
CA
|
E:PRO765
|
4.4
|
34.4
|
1.0
|
O
|
E:ARG763
|
4.4
|
25.7
|
1.0
|
C
|
E:PRO765
|
4.4
|
34.2
|
1.0
|
CB
|
E:CYS767
|
4.5
|
21.6
|
1.0
|
CA
|
E:ALA764
|
4.5
|
23.4
|
1.0
|
CB
|
E:ARG761
|
4.6
|
28.4
|
1.0
|
N
|
E:CYS762
|
4.6
|
17.0
|
1.0
|
CA
|
E:CYS762
|
4.6
|
20.2
|
1.0
|
C
|
E:ALA766
|
4.7
|
21.8
|
1.0
|
N
|
E:ARG763
|
4.8
|
22.2
|
1.0
|
O
|
E:HOH912
|
4.8
|
38.7
|
1.0
|
CB
|
E:CYS762
|
4.8
|
19.8
|
1.0
|
CA
|
E:ARG763
|
4.8
|
23.9
|
1.0
|
CA
|
E:ALA766
|
4.9
|
30.0
|
1.0
|
N
|
E:ASP768
|
4.9
|
27.5
|
1.0
|
C
|
E:ARG761
|
4.9
|
20.4
|
1.0
|
OD1
|
E:ASP768
|
5.0
|
51.7
|
1.0
|
|
Potassium binding site 2 out
of 3 in 3vux
Go back to
Potassium Binding Sites List in 3vux
Potassium binding site 2 out
of 3 in the Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K802
b:31.5
occ:1.00
|
O
|
F:ALA764
|
2.5
|
31.6
|
1.0
|
O
|
F:CYS762
|
2.6
|
28.2
|
1.0
|
O
|
F:CYS767
|
2.6
|
26.6
|
1.0
|
C
|
F:ALA764
|
3.7
|
35.3
|
1.0
|
O
|
F:HOH936
|
3.7
|
55.2
|
1.0
|
C
|
F:CYS762
|
3.7
|
24.5
|
1.0
|
C
|
F:CYS767
|
3.7
|
24.3
|
1.0
|
N
|
F:CYS767
|
3.8
|
24.6
|
1.0
|
O
|
F:HOH937
|
4.1
|
78.9
|
1.0
|
N
|
F:ALA766
|
4.1
|
32.6
|
1.0
|
CA
|
F:CYS767
|
4.2
|
21.8
|
1.0
|
O
|
F:HOH935
|
4.3
|
74.2
|
1.0
|
C
|
F:ARG763
|
4.3
|
27.9
|
1.0
|
CB
|
F:CYS767
|
4.4
|
18.6
|
1.0
|
N
|
F:ALA764
|
4.4
|
28.0
|
1.0
|
O
|
F:ARG763
|
4.4
|
28.5
|
1.0
|
N
|
F:CYS762
|
4.5
|
22.0
|
1.0
|
C
|
F:PRO765
|
4.5
|
37.0
|
1.0
|
CA
|
F:CYS762
|
4.5
|
20.5
|
1.0
|
CA
|
F:PRO765
|
4.5
|
41.4
|
1.0
|
N
|
F:PRO765
|
4.6
|
39.9
|
1.0
|
C
|
F:ALA766
|
4.6
|
26.2
|
1.0
|
CB
|
F:ARG761
|
4.6
|
30.9
|
1.0
|
N
|
F:ARG763
|
4.7
|
25.8
|
1.0
|
CA
|
F:ALA764
|
4.7
|
31.0
|
1.0
|
CB
|
F:CYS762
|
4.7
|
19.0
|
1.0
|
CA
|
F:ALA766
|
4.8
|
30.7
|
1.0
|
CA
|
F:ARG763
|
4.8
|
27.9
|
1.0
|
C
|
F:ARG761
|
4.9
|
27.0
|
1.0
|
N
|
F:ASP768
|
4.9
|
23.1
|
1.0
|
|
Potassium binding site 3 out
of 3 in 3vux
Go back to
Potassium Binding Sites List in 3vux
Potassium binding site 3 out
of 3 in the Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of A20 ZF7 in Complex with Linear Ubiquitin, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K802
b:35.0
occ:1.00
|
O
|
G:CYS762
|
2.4
|
18.3
|
1.0
|
O
|
G:ALA764
|
2.7
|
24.8
|
1.0
|
O
|
G:CYS767
|
2.7
|
22.2
|
1.0
|
O
|
G:HOH933
|
3.5
|
63.0
|
1.0
|
C
|
G:CYS762
|
3.6
|
25.1
|
1.0
|
O
|
G:HOH925
|
3.7
|
40.2
|
1.0
|
O
|
G:HOH927
|
3.7
|
57.7
|
1.0
|
O
|
G:HOH932
|
3.7
|
49.7
|
1.0
|
C
|
G:CYS767
|
3.8
|
24.4
|
1.0
|
C
|
G:ALA764
|
3.8
|
21.4
|
1.0
|
N
|
G:CYS767
|
3.8
|
20.2
|
1.0
|
N
|
G:ALA766
|
4.2
|
19.6
|
1.0
|
N
|
G:ALA764
|
4.2
|
21.1
|
1.0
|
C
|
G:ARG763
|
4.2
|
24.6
|
1.0
|
CA
|
G:CYS767
|
4.2
|
22.2
|
1.0
|
CA
|
G:ARG763
|
4.5
|
26.5
|
1.0
|
N
|
G:ARG763
|
4.5
|
24.5
|
1.0
|
CB
|
G:CYS767
|
4.5
|
16.7
|
1.0
|
CA
|
G:CYS762
|
4.5
|
25.0
|
1.0
|
N
|
G:CYS762
|
4.5
|
24.3
|
1.0
|
CB
|
G:ARG761
|
4.5
|
33.0
|
1.0
|
O
|
G:ARG763
|
4.6
|
25.8
|
1.0
|
C
|
G:ALA766
|
4.6
|
20.1
|
1.0
|
C
|
G:PRO765
|
4.6
|
22.0
|
1.0
|
CA
|
G:ALA764
|
4.7
|
21.1
|
1.0
|
N
|
G:PRO765
|
4.7
|
25.7
|
1.0
|
CA
|
G:PRO765
|
4.7
|
24.2
|
1.0
|
C
|
G:ARG761
|
4.8
|
25.5
|
1.0
|
CB
|
G:CYS762
|
4.8
|
25.8
|
1.0
|
CA
|
G:ALA766
|
4.8
|
22.5
|
1.0
|
N
|
G:ASP768
|
4.9
|
26.0
|
1.0
|
|
Reference:
F.Tokunaga,
H.Nishimasu,
R.Ishitani,
E.Goto,
T.Noguchi,
K.Mio,
K.Kamei,
A.Ma,
K.Iwai,
O.Nureki.
Specific Recognition of Linear Polyubiquitin By A20 Zinc Finger 7 Is Involved in Nf-Kappab Regulation Embo J. V. 31 3856 2012.
ISSN: ISSN 0261-4189
PubMed: 23032187
DOI: 10.1038/EMBOJ.2012.241
Page generated: Mon Aug 12 09:50:10 2024
|