Atomistry » Potassium » PDB 3ukm-3vrs » 3vm0
Atomistry »
  Potassium »
    PDB 3ukm-3vrs »
      3vm0 »

Potassium in PDB 3vm0: Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf

Enzymatic activity of Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf

All present enzymatic activity of Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf:
1.7.7.1;

Protein crystallography data

The structure of Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf, PDB code: 3vm0 was solved by S.Nakano, M.Takahashi, A.Sakamoto, H.Morikawa, K.Katayanagi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.76 / 1.70
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 133.229, 133.229, 77.644, 90.00, 90.00, 90.00
R / Rfree (%) 16.3 / 18.6

Other elements in 3vm0:

The structure of Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf also contains other interesting chemical elements:

Iron (Fe) 5 atoms
Chlorine (Cl) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf (pdb code 3vm0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf, PDB code: 3vm0:

Potassium binding site 1 out of 1 in 3vm0

Go back to Potassium Binding Sites List in 3vm0
Potassium binding site 1 out of 1 in the Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Assimilatory Nitrite Reductase (NII3) - N226K Mutant - NO2 Complex From Tobacco Leaf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K603

b:18.5
occ:1.00
 O A:HOH1013 2.3 11.3 1.0
OD1 A:ASN403 2.4 10.9 1.0
O A:HOH1027 2.4 15.5 1.0
O A:ILE371 2.5 10.8 1.0
O A:GLN402 2.8 10.9 1.0
O A:GLU401 2.8 10.9 1.0
CG A:ASN403 3.3 10.6 1.0
C A:GLN402 3.4 10.5 1.0
O A:HOH1042 3.5 12.5 1.0
C A:ILE371 3.6 10.6 1.0
ND2 A:ASN403 3.8 12.4 1.0
O A:LEU437 3.9 13.7 1.0
CB A:GLN402 3.9 10.0 1.0
N A:GLY374 4.0 10.8 1.0
C A:GLU401 4.0 10.6 1.0
N A:ASN403 4.0 10.6 1.0
ND1 A:HIS370 4.0 15.7 1.0
N A:VAL373 4.1 10.5 1.0
N A:ILE371 4.1 10.2 1.0
CA A:GLN402 4.1 9.7 1.0
CE1 A:HIS370 4.2 10.5 1.0
CA A:ILE371 4.3 10.7 1.0
CA A:ASN403 4.3 10.8 1.0
CB A:ASN403 4.4 11.4 1.0
CA A:VAL373 4.5 11.3 1.0
N A:GLN402 4.5 9.7 1.0
CB A:ILE371 4.5 10.5 1.0
N A:PRO372 4.6 11.0 1.0
C A:PRO372 4.6 10.4 1.0
CA A:GLY374 4.7 10.9 1.0
C A:VAL373 4.7 10.7 1.0
CA A:PRO372 4.7 10.7 1.0
OE1 A:GLN402 4.7 11.2 1.0

Reference:

S.Nakano, M.Takahashi, A.Sakamoto, H.Morikawa, K.Katayanagi. X-Ray Crystal Structure of A Mutant Assimilatory Nitrite Reductase That Shows Sulfite Reductase-Like Activity Chem.Biodivers. V. 9 1989 2012.
ISSN: ISSN 1612-1872
PubMed: 22976986
DOI: 10.1002/CBDV.201100442
Page generated: Mon Aug 12 09:49:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy