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Potassium in PDB 3u7j: Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis

Enzymatic activity of Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis

All present enzymatic activity of Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis:
5.3.1.6;

Protein crystallography data

The structure of Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis, PDB code: 3u7j was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.86 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 80.090, 73.470, 52.010, 90.00, 128.05, 90.00
R / Rfree (%) 16 / 20.7

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis (pdb code 3u7j). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis, PDB code: 3u7j:

Potassium binding site 1 out of 1 in 3u7j

Go back to Potassium Binding Sites List in 3u7j
Potassium binding site 1 out of 1 in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K238

b:21.7
occ:1.00
O A:HOH349 2.9 17.1 1.0
OE2 A:GLU111 2.9 10.0 1.0
O2 A:EDO237 3.0 10.1 1.0
N A:GLY105 3.5 14.6 1.0
CA A:GLY103 3.6 10.5 1.0
N A:ALA107 3.7 14.9 1.0
CD A:GLU111 3.7 9.5 1.0
OE1 A:GLU111 3.7 9.2 1.0
N A:GLY106 3.7 15.8 1.0
C A:GLY103 3.8 11.2 1.0
N A:GLY103 3.8 9.8 1.0
C A:GLY105 3.9 16.4 1.0
C2 A:EDO237 3.9 10.8 1.0
CA A:GLY105 3.9 15.8 1.0
N A:GLY104 4.0 11.7 1.0
C1 A:EDO237 4.2 10.8 1.0
CB A:ALA107 4.2 13.2 1.0
O A:HOH363 4.2 27.0 1.0
O A:GLY103 4.3 11.6 1.0
CA A:ALA107 4.4 13.5 1.0
O A:GLY105 4.5 17.3 1.0
CG2 A:THR36 4.5 8.9 1.0
C A:GLY104 4.6 13.9 1.0
C A:ALA107 4.6 11.5 1.0
C A:GLY106 4.6 16.4 1.0
N A:LEU108 4.6 10.7 1.0
O1 A:EDO237 4.7 9.8 1.0
CA A:GLY106 4.7 16.4 1.0
CB A:THR36 4.8 8.7 1.0
CA A:GLY104 4.9 12.8 1.0
O A:THR36 4.9 8.7 1.0

Reference:

L.Baugh, L.A.Gallagher, R.Patrapuvich, M.C.Clifton, A.S.Gardberg, T.E.Edwards, B.Armour, D.W.Begley, S.H.Dieterich, D.M.Dranow, J.Abendroth, J.W.Fairman, D.Fox, B.L.Staker, I.Phan, A.Gillespie, R.Choi, S.Nakazawa-Hewitt, M.T.Nguyen, A.Napuli, L.Barrett, G.W.Buchko, R.Stacy, P.J.Myler, L.J.Stewart, C.Manoil, W.C.Van Voorhis. Combining Functional and Structural Genomics to Sample the Essential Burkholderia Structome. Plos One V. 8 53851 2013.
ISSN: ESSN 1932-6203
PubMed: 23382856
DOI: 10.1371/JOURNAL.PONE.0053851
Page generated: Sun Dec 13 23:23:42 2020

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