Atomistry » Potassium » PDB 3rs9-3spj » 3s29
Atomistry »
  Potassium »
    PDB 3rs9-3spj »
      3s29 »

Potassium in PDB 3s29: The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.

Enzymatic activity of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.

All present enzymatic activity of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.:
2.4.1.13;

Protein crystallography data

The structure of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications., PDB code: 3s29 was solved by Y.I.Zheng, R.M.Garavito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.96 / 2.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 277.160, 261.500, 161.100, 90.00, 109.27, 90.00
R / Rfree (%) 18.5 / 23.4

Potassium Binding Sites:

The binding sites of Potassium atom in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. (pdb code 3s29). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications., PDB code: 3s29:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 1 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K931

b:72.1
occ:1.00
 O A:LEU194 2.4 48.1 1.0
O A:HIS187 2.5 49.8 1.0
O A:LEU184 2.6 48.0 1.0
O A:ARG185 2.6 63.3 1.0
O A:LEU196 2.7 62.6 1.0
C A:ARG185 3.1 61.0 1.0
C A:HIS187 3.5 52.4 1.0
C A:LEU194 3.5 46.9 1.0
N A:HIS187 3.5 54.8 1.0
OD1 A:ASN193 3.6 66.5 1.0
CA A:ARG185 3.6 57.5 1.0
C A:LEU184 3.6 49.9 1.0
N A:LEU194 3.8 52.3 1.0
C A:LEU196 3.9 57.3 1.0
CA A:HIS187 3.9 53.6 1.0
CG A:ASN193 4.0 65.9 1.0
C A:LEU186 4.0 58.5 1.0
N A:LEU186 4.0 57.3 1.0
ND2 A:ASN193 4.0 64.2 1.0
N A:LEU196 4.1 47.4 1.0
N A:ARG185 4.1 54.3 1.0
CA A:LEU194 4.1 50.9 1.0
CB A:HIS187 4.2 51.0 1.0
CA A:LEU186 4.4 57.9 1.0
CA A:LEU196 4.5 50.6 1.0
O A:LEU186 4.5 58.2 1.0
N A:MET195 4.6 46.4 1.0
C A:MET195 4.6 49.5 1.0
N A:SER188 4.7 57.3 1.0
C A:ASN193 4.8 54.3 1.0
CB A:MET195 4.8 47.5 1.0
CB A:LEU194 4.8 49.3 1.0
CA A:MET195 4.9 49.7 1.0
CA A:LEU184 4.9 48.4 1.0
N A:SER197 4.9 59.7 1.0

Potassium binding site 2 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 2 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K931

b:99.3
occ:1.00
 O B:HIS187 1.9 84.8 1.0
O B:LEU194 2.6 67.7 1.0
C B:HIS187 3.1 80.0 1.0
O B:LEU196 3.4 72.3 1.0
N B:LEU194 3.4 68.5 1.0
O B:ARG185 3.4 77.0 1.0
O B:LEU184 3.6 69.1 1.0
C B:LEU194 3.7 67.8 1.0
CG B:ASN193 3.7 83.1 1.0
OD1 B:ASN193 3.8 86.4 1.0
O B:LEU186 3.8 78.8 1.0
ND2 B:ASN193 3.8 77.5 1.0
N B:HIS187 3.9 81.0 1.0
C B:LEU186 3.9 83.0 1.0
CA B:HIS187 4.0 75.3 1.0
C B:ARG185 4.1 78.3 1.0
CA B:LEU194 4.1 65.0 1.0
N B:SER188 4.1 85.7 1.0
CA B:ASN193 4.2 75.0 1.0
CB B:SER188 4.2 85.6 1.0
C B:ASN193 4.2 72.2 1.0
CB B:ASN193 4.3 80.5 1.0
CA B:SER188 4.3 79.7 1.0
C B:LEU196 4.5 69.8 1.0
CB B:HIS187 4.5 72.3 1.0
C B:LEU184 4.6 70.4 1.0
N B:LEU186 4.7 76.2 1.0
N B:LEU196 4.7 58.4 1.0
CB B:LEU194 4.7 59.5 1.0
CA B:LEU186 4.8 81.0 1.0
CA B:ARG185 4.8 78.3 1.0
N B:MET195 4.9 62.1 1.0

Potassium binding site 3 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 3 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K931

b:75.6
occ:1.00
 O C:LEU196 2.2 56.6 1.0
O C:ARG185 2.3 63.5 1.0
O C:LEU184 2.7 52.5 1.0
C C:ARG185 2.7 56.6 1.0
O C:LEU194 2.8 46.1 1.0
CA C:ARG185 3.1 52.2 1.0
O C:HIS187 3.3 56.8 1.0
C C:LEU196 3.4 53.6 1.0
OD1 C:ASN193 3.5 64.3 1.0
C C:LEU184 3.6 52.5 1.0
N C:LEU186 3.7 55.6 1.0
N C:HIS187 3.8 50.8 1.0
N C:ARG185 3.8 51.9 1.0
N C:LEU196 3.8 48.0 1.0
C C:LEU194 4.0 48.2 1.0
CG C:ASN193 4.0 62.2 1.0
CA C:LEU196 4.1 51.3 1.0
C C:LEU186 4.1 52.3 1.0
ND2 C:ASN193 4.1 62.3 1.0
C C:HIS187 4.2 57.2 1.0
CA C:LEU186 4.3 54.5 1.0
N C:LEU194 4.4 59.5 1.0
CA C:HIS187 4.4 52.4 1.0
N C:SER197 4.4 56.5 1.0
CB C:ARG185 4.5 57.7 1.0
CB C:LEU196 4.5 51.6 1.0
CB C:HIS187 4.6 52.1 1.0
CA C:SER197 4.6 58.1 1.0
C C:MET195 4.6 46.1 1.0
CB C:MET195 4.7 43.2 1.0
CG C:ARG185 4.7 64.8 1.0
CA C:LEU194 4.8 53.1 1.0
O C:LEU186 4.8 54.4 1.0
N C:MET195 4.9 47.2 1.0
CA C:MET195 5.0 44.9 1.0
CA C:LEU184 5.0 46.5 1.0

Potassium binding site 4 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 4 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K931

b:81.1
occ:1.00
 O D:ARG185 2.5 65.0 1.0
O D:LEU196 2.5 57.6 1.0
O D:HIS187 2.7 59.8 1.0
O D:LEU194 2.8 53.7 1.0
OD1 D:ASN193 2.8 70.3 1.0
O D:LEU184 2.8 56.9 1.0
C D:ARG185 3.1 60.2 1.0
CG D:ASN193 3.6 67.0 1.0
CA D:ARG185 3.6 53.6 1.0
N D:HIS187 3.7 55.7 1.0
C D:LEU196 3.7 55.9 1.0
C D:HIS187 3.7 59.5 1.0
ND2 D:ASN193 3.8 63.9 1.0
C D:LEU186 3.8 54.4 1.0
C D:LEU184 3.9 56.0 1.0
C D:LEU194 3.9 55.8 1.0
N D:LEU186 3.9 58.3 1.0
N D:LEU194 4.0 55.4 1.0
CA D:HIS187 4.2 57.8 1.0
N D:ARG185 4.2 56.4 1.0
O D:LEU186 4.2 56.8 1.0
N D:LEU196 4.2 51.1 1.0
CA D:LEU186 4.3 57.2 1.0
CA D:LEU196 4.5 55.4 1.0
CA D:LEU194 4.5 57.0 1.0
CB D:HIS187 4.6 54.1 1.0
N D:SER197 4.7 59.0 1.0
CB D:ASN193 4.8 63.3 1.0
CA D:SER197 4.8 62.3 1.0
C D:ASN193 4.9 56.8 1.0
N D:SER188 4.9 55.9 1.0
C D:MET195 4.9 51.3 1.0
CB D:ARG185 5.0 55.4 1.0

Potassium binding site 5 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 5 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K931

b:79.1
occ:1.00
 O E:LEU196 2.3 57.1 1.0
O E:LEU184 2.4 53.8 1.0
O E:LEU194 2.4 53.3 1.0
O E:ARG185 2.6 62.8 1.0
C E:ARG185 3.0 55.1 1.0
CA E:ARG185 3.2 50.2 1.0
O E:HIS187 3.2 59.4 1.0
C E:LEU184 3.4 53.5 1.0
C E:LEU196 3.4 53.9 1.0
OD1 E:ASN193 3.5 65.5 1.0
C E:LEU194 3.6 52.5 1.0
N E:LEU196 3.7 50.5 1.0
N E:ARG185 3.7 48.7 1.0
N E:HIS187 3.9 53.4 1.0
N E:LEU186 3.9 51.1 1.0
CG E:ASN193 4.0 66.8 1.0
CA E:LEU196 4.0 49.5 1.0
N E:LEU194 4.0 56.4 1.0
ND2 E:ASN193 4.1 67.6 1.0
C E:HIS187 4.2 56.7 1.0
C E:LEU186 4.2 53.7 1.0
CA E:HIS187 4.4 53.7 1.0
C E:MET195 4.4 49.0 1.0
CA E:LEU194 4.4 51.4 1.0
CB E:LEU196 4.4 54.6 1.0
CB E:MET195 4.4 49.7 1.0
CA E:LEU186 4.5 50.9 1.0
N E:SER197 4.5 63.0 1.0
CB E:HIS187 4.6 50.1 1.0
CB E:ARG185 4.6 59.5 1.0
N E:MET195 4.6 48.8 1.0
CA E:MET195 4.7 48.9 1.0
CA E:LEU184 4.7 49.0 1.0
O E:LEU186 4.9 60.1 1.0
CA E:SER197 4.9 64.0 1.0
O E:SER197 4.9 65.2 1.0
CG E:ARG185 4.9 64.9 1.0

Potassium binding site 6 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 6 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K931

b:89.5
occ:1.00
 O F:LEU196 2.5 65.9 1.0
O F:ARG185 2.6 73.6 1.0
O F:LEU194 2.6 56.8 1.0
O F:LEU184 2.7 59.1 1.0
O F:HIS187 2.8 69.2 1.0
OD1 F:ASN193 2.8 78.0 1.0
C F:ARG185 3.1 65.0 1.0
CA F:ARG185 3.5 58.9 1.0
C F:LEU184 3.7 61.4 1.0
C F:LEU196 3.7 63.9 1.0
CG F:ASN193 3.7 76.7 1.0
C F:LEU194 3.7 58.3 1.0
N F:HIS187 3.8 72.5 1.0
C F:HIS187 3.8 68.8 1.0
N F:LEU194 3.9 64.0 1.0
N F:ARG185 4.0 59.8 1.0
N F:LEU196 4.1 52.8 1.0
N F:LEU186 4.1 63.9 1.0
CA F:HIS187 4.1 67.3 1.0
ND2 F:ASN193 4.2 73.2 1.0
C F:LEU186 4.2 70.2 1.0
CB F:HIS187 4.3 64.1 1.0
CA F:LEU194 4.4 60.3 1.0
CA F:LEU196 4.4 54.2 1.0
CA F:LEU186 4.6 65.2 1.0
CB F:MET195 4.7 52.1 1.0
N F:SER197 4.7 65.7 1.0
C F:MET195 4.7 54.7 1.0
O F:LEU186 4.8 68.4 1.0
N F:MET195 4.8 55.2 1.0
C F:ASN193 4.9 68.2 1.0
CB F:ASN193 4.9 73.8 1.0
CB F:ARG185 4.9 65.3 1.0
CA F:SER197 4.9 66.9 1.0
CB F:LEU196 4.9 55.6 1.0
CA F:MET195 5.0 52.2 1.0
N F:SER188 5.0 72.6 1.0

Potassium binding site 7 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 7 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K931

b:76.4
occ:1.00
 O G:LEU196 2.2 59.0 1.0
O G:LEU184 2.4 56.8 1.0
O G:ARG185 2.4 58.7 1.0
O G:LEU194 2.7 52.6 1.0
C G:ARG185 2.7 54.2 1.0
CA G:ARG185 3.0 51.1 1.0
C G:LEU184 3.3 53.0 1.0
C G:LEU196 3.3 55.5 1.0
OD1 G:ASN193 3.4 57.2 1.0
O G:HIS187 3.4 47.6 1.0
N G:ARG185 3.6 50.4 1.0
N G:LEU196 3.6 50.1 1.0
N G:LEU186 3.7 52.5 1.0
N G:HIS187 3.7 52.1 1.0
C G:LEU194 3.9 49.9 1.0
CA G:LEU196 3.9 52.6 1.0
C G:LEU186 4.0 57.4 1.0
C G:HIS187 4.2 55.3 1.0
CG G:ASN193 4.2 64.7 1.0
CA G:HIS187 4.3 54.8 1.0
CB G:ARG185 4.3 56.5 1.0
CA G:LEU186 4.3 55.4 1.0
CB G:LEU196 4.3 47.3 1.0
C G:MET195 4.4 47.1 1.0
N G:SER197 4.5 60.7 1.0
N G:LEU194 4.5 55.6 1.0
CB G:MET195 4.5 48.0 1.0
ND2 G:ASN193 4.5 65.7 1.0
CB G:HIS187 4.6 55.1 1.0
O G:LEU186 4.6 63.8 1.0
CG G:ARG185 4.7 58.4 1.0
CA G:LEU184 4.7 47.6 1.0
CA G:SER197 4.7 64.3 1.0
CA G:MET195 4.8 44.4 1.0
CA G:LEU194 4.8 50.8 1.0
N G:MET195 4.8 50.0 1.0

Potassium binding site 8 out of 8 in 3s29

Go back to Potassium Binding Sites List in 3s29
Potassium binding site 8 out of 8 in the The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of The Crystal Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K931

b:74.5
occ:1.00
 O H:HIS187 2.6 55.6 1.0
O H:LEU194 2.6 45.7 1.0
O H:LEU196 2.7 58.5 1.0
O H:ARG185 2.7 62.2 1.0
OD1 H:ASN193 2.8 68.8 1.0
CG H:ASN193 3.2 64.7 1.0
ND2 H:ASN193 3.3 63.9 1.0
C H:ARG185 3.5 59.6 1.0
O H:LEU184 3.5 54.1 1.0
N H:LEU194 3.6 52.7 1.0
C H:HIS187 3.6 57.8 1.0
C H:LEU194 3.7 47.7 1.0
N H:HIS187 3.8 52.1 1.0
C H:LEU196 3.8 55.4 1.0
C H:LEU186 3.9 58.3 1.0
CA H:HIS187 4.1 53.7 1.0
O H:LEU186 4.2 67.8 1.0
CA H:ARG185 4.2 61.6 1.0
CA H:LEU194 4.2 48.3 1.0
CB H:ASN193 4.2 58.6 1.0
N H:LEU186 4.3 60.7 1.0
N H:LEU196 4.4 51.6 1.0
C H:ASN193 4.4 55.2 1.0
CA H:ASN193 4.4 51.6 1.0
CA H:LEU186 4.5 58.7 1.0
C H:LEU184 4.5 56.7 1.0
CB H:HIS187 4.6 50.0 1.0
N H:SER188 4.7 59.5 1.0
N H:SER197 4.7 61.4 1.0
CA H:LEU196 4.7 51.8 1.0
CA H:SER197 4.7 58.9 1.0
N H:ARG185 4.8 56.7 1.0
N H:MET195 4.9 47.7 1.0
C H:MET195 4.9 49.0 1.0
CG H:GLU239 5.0 54.8 1.0
CB H:LEU194 5.0 47.1 1.0

Reference:

Y.Zheng, S.Anderson, Y.Zhang, R.M.Garavito. The Structure of Sucrose Synthase-1 From Arabidopsis Thaliana and Its Functional Implications. J.Biol.Chem. V. 286 36108 2011.
ISSN: ISSN 0021-9258
PubMed: 21865170
DOI: 10.1074/JBC.M111.275974
Page generated: Mon Aug 12 09:25:05 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy