Atomistry » Potassium » PDB 3rs9-3spj » 3ru3
Atomistry »
  Potassium »
    PDB 3rs9-3spj »
      3ru3 »

Potassium in PDB 3ru3: Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp.

Enzymatic activity of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp.

All present enzymatic activity of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp.:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp., PDB code: 3ru3 was solved by I.A.Shumilin, M.Cymborowski, S.A.Lesley, W.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.60
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 120.943, 120.943, 154.802, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 23.7

Other elements in 3ru3:

The structure of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp. also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp. (pdb code 3ru3). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp., PDB code: 3ru3:

Potassium binding site 1 out of 1 in 3ru3

Go back to Potassium Binding Sites List in 3ru3
Potassium binding site 1 out of 1 in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nadph and Atp. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K491

b:70.3
occ:1.00
O A:ASP114 2.9 40.7 1.0
OG A:SER150 2.9 46.5 1.0
O A:VAL148 2.9 45.4 1.0
OD1 A:ASN52 2.9 43.2 1.0
O A:PHE117 3.0 41.9 1.0
O A:VAL146 3.2 39.6 1.0
OD1 A:ASP114 3.5 42.2 1.0
OD2 A:ASP114 3.5 38.5 1.0
CG A:ASP114 3.7 41.1 1.0
C A:PHE117 3.7 42.3 1.0
C A:ASP114 3.8 39.6 1.0
CG A:ASN52 3.8 42.4 1.0
N A:SER150 3.8 44.7 1.0
CA A:ALA115 3.9 37.4 1.0
N A:ILE116 3.9 39.5 1.0
N A:PHE117 4.0 42.7 1.0
N A:VAL146 4.0 37.8 1.0
ND2 A:ASN52 4.1 42.5 1.0
C A:VAL148 4.1 45.2 1.0
C A:ALA115 4.1 38.3 1.0
CB A:SER150 4.1 46.0 1.0
C A:VAL146 4.2 38.3 1.0
N A:ALA115 4.2 38.8 1.0
CA A:SER150 4.2 45.1 1.0
CA A:VAL146 4.5 37.3 1.0
C A:PRO149 4.5 45.7 1.0
N A:GLY118 4.5 41.6 1.0
CA A:PHE117 4.5 43.9 1.0
CB A:VAL146 4.6 37.2 1.0
CA A:PRO149 4.6 45.9 1.0
CB A:ASP114 4.7 42.2 1.0
CA A:GLY118 4.7 41.4 1.0
C A:ILE116 4.8 41.8 1.0
N A:VAL148 4.8 43.4 1.0
N A:PRO149 4.8 45.5 1.0
CA A:ILE116 4.9 40.7 1.0
CB A:SER145 4.9 39.8 1.0
C A:SER145 4.9 38.6 1.0
CA A:ASP114 4.9 41.0 1.0

Reference:

I.A.Shumilin, M.Cymborowski, O.Chertihin, K.N.Jha, J.C.Herr, S.A.Lesley, A.Joachimiak, W.Minor. Identification of Unknown Protein Function Using Metabolite Cocktail Screening. Structure V. 20 1715 2012.
ISSN: ISSN 0969-2126
PubMed: 22940582
DOI: 10.1016/J.STR.2012.07.016
Page generated: Sun Dec 13 23:22:37 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy