Atomistry » Potassium » PDB 3oyt-3q9b » 3pw3
Atomistry »
  Potassium »
    PDB 3oyt-3q9b »
      3pw3 »

Potassium in PDB 3pw3: Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution, PDB code: 3pw3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.97 / 2.23
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 104.592, 137.810, 223.165, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.1

Other elements in 3pw3:

The structure of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 14 atoms
Zinc (Zn) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution (pdb code 3pw3). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 10 binding sites of Potassium where determined in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution, PDB code: 3pw3:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 1 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K407

b:40.0
occ:1.00
O A:GLU335 2.3 26.6 1.0
O A:HOH596 2.4 27.2 1.0
O A:HOH637 2.5 29.4 1.0
OG A:SER273 2.6 30.4 1.0
O A:SER273 2.7 35.4 1.0
OE2 A:GLU274 2.7 34.9 1.0
OD2 A:ASP271 2.8 35.7 1.0
OD1 A:ASP271 2.8 42.6 1.0
CG A:ASP271 3.0 30.7 1.0
C A:GLU335 3.5 24.3 1.0
C A:SER273 3.6 33.1 1.0
CD A:GLU274 3.7 46.3 1.0
CB A:SER273 3.8 31.4 1.0
NZ A:LYS383 3.8 34.6 1.0
O A:HOH1826 4.0 51.5 1.0
CA A:SER273 4.1 32.5 1.0
CG A:GLU274 4.2 38.9 1.0
CA A:GLU335 4.3 23.9 1.0
N A:SER273 4.4 29.8 1.0
N A:THR336 4.4 22.9 1.0
CA A:THR336 4.4 24.2 1.0
O A:HOH1858 4.4 52.4 1.0
CB A:ASP271 4.4 27.5 1.0
OG1 A:THR337 4.4 20.7 0.5
OD1 A:ASP339 4.5 21.1 0.5
N A:GLU274 4.7 33.9 1.0
OE1 A:GLU274 4.7 43.3 1.0
N A:THR337 4.8 30.1 0.5
N A:THR337 4.8 24.7 0.5
O F:HOH1175 4.8 40.2 1.0
CE A:LYS383 4.8 33.8 1.0
CD A:LYS383 4.9 28.5 1.0
O A:TYR334 4.9 21.5 1.0

Potassium binding site 2 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 2 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K408

b:31.1
occ:1.00
O A:HOH623 2.3 28.1 1.0
O A:LEU79 2.3 24.4 1.0
O A:HOH870 2.4 33.4 1.0
OE1 A:GLU81 2.5 23.8 1.0
OD1 A:ASP78 2.5 28.9 1.0
OE1 A:GLU126 2.5 27.3 1.0
OE2 A:GLU81 2.9 25.7 1.0
CD A:GLU81 3.0 21.7 1.0
CD A:GLU126 3.4 31.8 1.0
C A:LEU79 3.5 23.4 1.0
CG A:ASP78 3.7 28.1 1.0
O A:HOH1050 3.8 36.8 1.0
N A:LEU79 3.9 24.1 1.0
OE2 A:GLU126 4.2 32.8 1.0
CG A:GLU126 4.2 27.8 1.0
O A:HOH934 4.2 36.3 1.0
C A:ASP78 4.3 23.4 1.0
OD2 A:ASP78 4.3 32.8 1.0
CB A:GLU126 4.3 27.8 1.0
N A:GLU81 4.3 19.9 1.0
CA A:LEU79 4.3 22.9 1.0
OE2 A:GLU66 4.4 28.8 1.0
N A:SER80 4.4 23.2 1.0
CA A:SER80 4.5 22.8 1.0
CE A:LYS48 4.5 26.4 1.0
CG A:GLU81 4.5 20.2 1.0
CA A:ASP78 4.7 24.3 1.0
O A:ASP78 4.8 25.3 1.0
O A:HOH642 4.8 28.6 1.0
CB A:ASP78 4.8 23.7 1.0
C A:SER80 4.9 21.7 1.0
O A:HOH617 4.9 29.3 1.0
CA A:GLU126 5.0 26.4 1.0

Potassium binding site 3 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 3 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K410

b:29.7
occ:1.00
O B:LEU79 2.3 20.9 1.0
O B:HOH578 2.3 26.7 1.0
OD1 B:ASP78 2.4 26.6 1.0
OE1 B:GLU81 2.5 27.2 1.0
OE1 B:GLU126 2.5 26.0 1.0
O B:HOH689 2.5 30.1 1.0
OE2 B:GLU81 2.9 30.7 1.0
CD B:GLU81 3.1 26.3 1.0
CD B:GLU126 3.4 27.4 1.0
C B:LEU79 3.5 22.9 1.0
CG B:ASP78 3.6 27.5 1.0
N B:LEU79 3.9 21.5 1.0
O B:HOH904 3.9 34.5 1.0
OE2 B:GLU126 4.2 28.3 1.0
CG B:GLU126 4.2 25.8 1.0
OD2 B:ASP78 4.2 32.8 1.0
CB B:GLU126 4.2 25.1 1.0
C B:ASP78 4.2 22.6 1.0
O B:HOH1141 4.3 40.1 1.0
N B:GLU81 4.3 20.7 1.0
CA B:LEU79 4.3 22.2 1.0
OE2 B:GLU66 4.4 31.6 1.0
N B:SER80 4.4 23.4 1.0
CE B:LYS48 4.5 27.4 1.0
CA B:SER80 4.5 22.0 1.0
CG B:GLU81 4.5 24.7 1.0
CA B:ASP78 4.7 24.1 1.0
O B:ASP78 4.8 22.2 1.0
CB B:ASP78 4.8 25.1 1.0
O B:HOH674 4.8 30.3 1.0
C B:SER80 4.9 22.3 1.0
O B:HOH775 5.0 32.5 1.0
CA B:GLU126 5.0 24.9 1.0
CG B:LYS48 5.0 24.9 1.0
CD B:LYS48 5.0 25.7 1.0

Potassium binding site 4 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 4 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K412

b:84.0
occ:1.00
O C:GLU335 2.3 43.3 1.0
O C:HOH1589 2.4 49.8 1.0
OG C:SER273 2.7 72.3 1.0
O C:SER273 2.7 82.9 1.0
O C:HOH1840 2.9 48.3 1.0
OE2 C:GLU274 2.9 96.5 1.0
OD2 C:ASP271 3.0 55.0 1.0
OD1 C:ASP271 3.2 50.9 1.0
CG C:ASP271 3.5 49.7 1.0
C C:GLU335 3.5 39.6 1.0
C C:SER273 3.8 77.7 1.0
CB C:SER273 3.9 70.8 1.0
CD C:GLU274 3.9 0.5 1.0
NZ C:LYS383 4.3 47.1 1.0
CA C:GLU335 4.3 38.8 1.0
CA C:SER273 4.3 69.9 1.0
N C:THR336 4.4 40.3 1.0
CG C:GLU274 4.5 0.2 1.0
CA C:THR336 4.5 40.2 1.0
N C:SER273 4.7 68.7 1.0
OE1 C:GLU274 4.8 0.6 1.0
N C:GLU274 4.8 80.8 1.0
O C:HOH2048 4.8 57.1 1.0
CB C:ASP271 4.8 44.8 1.0
O C:TYR334 4.9 35.6 1.0
N C:THR337 4.9 45.4 1.0
OG1 C:THR337 5.0 58.9 1.0
CB C:GLU335 5.0 40.8 1.0

Potassium binding site 5 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 5 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K414

b:52.6
occ:1.00
O C:HOH1169 2.3 46.5 1.0
O C:LEU79 2.4 44.6 1.0
OD1 C:ASP78 2.4 50.9 1.0
OE1 C:GLU126 2.4 49.0 1.0
O C:HOH1724 2.5 48.8 1.0
OE1 C:GLU81 2.5 42.0 1.0
OE2 C:GLU81 3.0 41.3 1.0
CD C:GLU81 3.1 42.2 1.0
CD C:GLU126 3.4 49.6 1.0
C C:LEU79 3.5 43.3 1.0
CG C:ASP78 3.6 55.3 1.0
N C:LEU79 3.9 46.5 1.0
OE2 C:GLU126 4.1 52.1 1.0
CG C:GLU126 4.1 48.8 1.0
CB C:GLU126 4.2 47.1 1.0
OD2 C:ASP78 4.2 58.5 1.0
C C:ASP78 4.3 48.8 1.0
N C:GLU81 4.4 39.2 1.0
CA C:LEU79 4.4 45.6 1.0
OE2 C:GLU66 4.4 58.5 1.0
N C:SER80 4.4 40.8 1.0
CE C:LYS48 4.4 57.6 1.0
CA C:SER80 4.5 40.9 1.0
CG C:GLU81 4.6 41.0 1.0
CA C:ASP78 4.7 52.2 1.0
O C:HOH1476 4.7 44.3 1.0
O C:ASP78 4.7 47.7 1.0
CB C:ASP78 4.7 53.6 1.0
CA C:GLU126 4.9 46.4 1.0
C C:SER80 4.9 37.9 1.0
CD C:LYS48 5.0 55.1 1.0
CG C:LYS48 5.0 53.0 1.0
O C:HOH1780 5.0 51.9 1.0

Potassium binding site 6 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 6 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K409

b:42.5
occ:1.00
O D:LEU79 2.4 37.2 1.0
O D:HOH888 2.4 33.8 1.0
OD1 D:ASP78 2.5 39.7 1.0
O D:HOH1447 2.5 44.5 1.0
OE1 D:GLU81 2.5 35.6 1.0
OE1 D:GLU126 2.6 38.6 1.0
OE2 D:GLU81 2.8 34.0 1.0
CD D:GLU81 3.0 34.6 1.0
C D:LEU79 3.5 37.2 1.0
CD D:GLU126 3.6 42.4 1.0
CG D:ASP78 3.7 42.4 1.0
N D:LEU79 3.9 39.0 1.0
OE2 D:GLU66 4.2 47.1 1.0
C D:ASP78 4.3 39.5 1.0
OD2 D:ASP78 4.3 48.6 1.0
CA D:LEU79 4.3 37.6 1.0
OE2 D:GLU126 4.3 42.3 1.0
CE D:LYS48 4.4 47.8 1.0
CG D:GLU126 4.4 40.8 1.0
CB D:GLU126 4.4 40.6 1.0
N D:GLU81 4.4 31.9 1.0
O D:HOH1199 4.5 39.7 1.0
N D:SER80 4.5 37.2 1.0
CG D:GLU81 4.5 33.0 1.0
CA D:SER80 4.6 33.4 1.0
CA D:ASP78 4.7 42.5 1.0
CB D:ASP78 4.8 42.0 1.0
O D:HOH982 4.8 36.4 1.0
O D:ASP78 4.8 39.0 1.0
CG D:LYS48 4.8 44.4 1.0
CD D:LYS48 4.9 45.4 1.0
C D:SER80 5.0 33.4 1.0

Potassium binding site 7 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 7 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K411

b:70.2
occ:1.00
O D:GLU335 2.3 39.9 1.0
O D:HOH1382 2.4 42.9 1.0
OG D:SER273 2.7 50.2 1.0
O D:SER273 2.7 57.0 1.0
OE2 D:GLU274 2.8 71.9 1.0
OD2 D:ASP271 2.9 48.2 1.0
OD1 D:ASP271 3.0 52.9 1.0
CG D:ASP271 3.2 45.2 1.0
C D:GLU335 3.5 35.2 1.0
C D:SER273 3.7 59.9 1.0
CD D:GLU274 3.8 87.1 1.0
CB D:SER273 3.8 57.3 1.0
NZ D:LYS383 4.0 43.9 1.0
CA D:SER273 4.2 54.5 1.0
CA D:GLU335 4.3 34.9 1.0
CG D:GLU274 4.3 78.3 1.0
N D:THR336 4.4 35.1 1.0
CA D:THR336 4.4 35.9 1.0
O D:HOH1851 4.5 53.4 1.0
N D:SER273 4.5 51.0 1.0
CB D:ASP271 4.6 42.3 1.0
OE1 D:GLU274 4.7 84.8 1.0
N D:GLU274 4.7 62.4 1.0
N D:THR337 4.8 41.6 1.0
O D:HOH1240 4.9 42.8 1.0
O D:TYR334 4.9 31.3 1.0
O E:HOH1810 5.0 50.9 1.0

Potassium binding site 8 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 8 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K415

b:39.0
occ:1.00
O E:HOH541 2.3 24.9 1.0
O E:LEU79 2.4 27.7 1.0
OD1 E:ASP78 2.4 38.0 1.0
O E:HOH1034 2.4 39.3 1.0
OE1 E:GLU126 2.5 42.3 1.0
OE1 E:GLU81 2.5 29.9 1.0
OE2 E:GLU81 3.0 37.8 1.0
CD E:GLU81 3.1 32.6 1.0
CD E:GLU126 3.4 37.8 1.0
C E:LEU79 3.5 27.7 1.0
CG E:ASP78 3.6 39.9 1.0
N E:LEU79 3.9 28.6 1.0
O E:HOH1358 3.9 41.9 1.0
OE2 E:GLU126 4.2 36.3 1.0
CG E:GLU126 4.2 35.0 1.0
OD2 E:ASP78 4.2 42.9 1.0
C E:ASP78 4.2 30.3 1.0
O E:HOH1559 4.2 48.9 1.0
CB E:GLU126 4.2 32.3 1.0
OE2 E:GLU66 4.4 37.3 1.0
N E:GLU81 4.4 25.4 1.0
CA E:LEU79 4.4 28.1 1.0
CE E:LYS48 4.4 37.3 1.0
N E:SER80 4.4 28.5 1.0
CA E:SER80 4.5 28.3 1.0
CG E:GLU81 4.6 31.0 1.0
CA E:ASP78 4.7 32.7 1.0
CB E:ASP78 4.7 35.3 1.0
O E:ASP78 4.8 28.5 1.0
CG E:LYS48 4.9 33.8 1.0
CD E:LYS48 4.9 34.4 1.0
O E:HOH819 4.9 32.6 1.0
C E:SER80 4.9 26.5 1.0
O E:HOH804 5.0 33.0 1.0
CA E:GLU126 5.0 32.9 1.0

Potassium binding site 9 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 9 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K413

b:90.9
occ:1.00
O F:GLU335 2.5 32.8 1.0
O F:HOH1591 2.7 48.8 1.0
O F:SER273 2.7 75.2 1.0
OG F:SER273 2.9 57.7 1.0
OE2 F:GLU274 3.1 97.0 1.0
C F:GLU335 3.6 31.0 1.0
OD2 F:ASP271 3.6 45.9 1.0
OD1 F:ASP271 3.8 50.6 1.0
C F:SER273 3.9 67.7 1.0
CD F:GLU274 4.0 96.5 1.0
CB F:SER273 4.0 56.3 1.0
CG F:ASP271 4.1 39.0 1.0
CA F:GLU335 4.2 31.0 1.0
NZ F:LYS383 4.4 46.0 1.0
CA F:SER273 4.5 61.5 1.0
O A:HOH1444 4.6 43.6 1.0
N F:THR336 4.7 29.1 1.0
CG F:GLU274 4.7 87.0 1.0
OE1 F:GLU274 4.7 89.8 1.0
O F:TYR334 4.8 29.0 1.0
CB F:GLU335 4.8 33.8 1.0
N F:GLU274 4.9 69.9 1.0
CA F:THR336 4.9 31.7 1.0

Potassium binding site 10 out of 10 in 3pw3

Go back to Potassium Binding Sites List in 3pw3
Potassium binding site 10 out of 10 in the Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of A Cysteine Protease (BDI_2249) From Parabacteroides Distasonis Atcc 8503 at 2.23 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K416

b:40.3
occ:1.00
O F:HOH916 2.3 34.9 1.0
OD1 F:ASP78 2.4 46.1 1.0
O F:LEU79 2.4 35.4 1.0
OE1 F:GLU126 2.5 42.2 1.0
O F:HOH984 2.5 38.2 1.0
OE1 F:GLU81 2.6 35.0 1.0
OE2 F:GLU81 3.0 38.3 1.0
CD F:GLU81 3.2 34.7 1.0
CD F:GLU126 3.4 42.2 1.0
C F:LEU79 3.5 31.5 1.0
CG F:ASP78 3.6 43.6 1.0
N F:LEU79 3.9 31.2 1.0
O F:HOH1194 4.0 37.0 1.0
OD2 F:ASP78 4.1 50.4 1.0
OE2 F:GLU126 4.1 41.3 1.0
CG F:GLU126 4.2 39.0 1.0
CB F:GLU126 4.2 36.8 1.0
C F:ASP78 4.2 34.7 1.0
O F:HOH1750 4.3 48.0 1.0
CA F:LEU79 4.4 30.8 1.0
OE2 F:GLU66 4.4 42.1 1.0
N F:GLU81 4.4 29.0 1.0
CE F:LYS48 4.4 43.9 1.0
N F:SER80 4.4 31.0 1.0
CA F:SER80 4.5 30.5 1.0
CG F:GLU81 4.7 32.8 1.0
CA F:ASP78 4.7 38.4 1.0
CB F:ASP78 4.7 40.4 1.0
O F:ASP78 4.7 32.6 1.0
O F:HOH1040 4.7 37.5 1.0
O F:HOH1123 4.9 38.7 1.0
CA F:GLU126 4.9 37.0 1.0
CD F:LYS48 5.0 42.0 1.0
C F:SER80 5.0 28.2 1.0
CG F:LYS48 5.0 40.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 23:21:38 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy