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Potassium in PDB 3p1v: Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution, PDB code: 3p1v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.91 / 1.93
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.919, 84.963, 139.758, 90.00, 99.56, 90.00
R / Rfree (%) 17 / 20.7

Other elements in 3p1v:

The structure of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 4 atoms
Chlorine (Cl) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution (pdb code 3p1v). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution, PDB code: 3p1v:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 3p1v

Go back to Potassium Binding Sites List in 3p1v
Potassium binding site 1 out of 2 in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K428

b:35.3
occ:1.00
O A:HOH616 2.2 34.5 1.0
O A:CYS175 2.3 36.1 1.0
O A:GLU172 2.3 38.4 1.0
O A:ALA58 2.3 33.6 1.0
OD2 A:ASP177 2.3 32.5 1.0
OE2 A:GLU275 2.5 28.4 1.0
CD A:GLU275 3.4 38.5 1.0
C A:GLU172 3.4 40.0 1.0
C A:ALA58 3.5 35.5 1.0
C A:CYS175 3.5 36.1 1.0
CG A:ASP177 3.5 33.7 1.0
N A:ASP177 3.8 28.1 1.0
CA A:GLU172 3.9 36.4 1.0
O A:HOH592 4.0 33.9 1.0
OE1 A:GLU275 4.1 33.5 1.0
CG A:GLU275 4.2 32.1 1.0
CA A:ILE176 4.2 28.1 1.0
CA A:ALA58 4.2 32.8 1.0
CB A:ASP177 4.2 27.7 1.0
N A:ILE176 4.3 30.1 1.0
CB A:GLU172 4.4 37.5 1.0
OD1 A:ASP177 4.4 35.8 1.0
C A:ILE176 4.4 31.2 1.0
N A:CYS175 4.5 36.1 1.0
N A:GLY59 4.5 31.4 1.0
O A:GLY59 4.5 34.3 1.0
N A:LYS173 4.5 39.3 1.0
CB A:ALA58 4.5 31.9 1.0
CA A:CYS175 4.5 34.8 1.0
O A:LYS173 4.6 44.4 1.0
CA A:GLY59 4.6 29.7 1.0
CA A:ASP177 4.7 26.2 1.0
C A:LYS173 4.7 44.4 1.0
CA A:LYS173 4.8 39.8 1.0
C A:GLY59 4.8 34.6 1.0

Potassium binding site 2 out of 2 in 3p1v

Go back to Potassium Binding Sites List in 3p1v
Potassium binding site 2 out of 2 in the Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Metallo-Endopeptidases (BACOVA_00663) From Bacteroides Ovatus at 1.93 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K429

b:41.6
occ:1.00
O B:CYS175 2.3 42.4 1.0
OD2 B:ASP177 2.3 48.7 1.0
O B:GLU172 2.3 44.9 1.0
O B:ALA58 2.3 37.5 1.0
OE2 B:GLU275 2.4 34.4 1.0
O B:HOH597 2.6 35.2 1.0
CD B:GLU275 3.3 48.0 1.0
C B:GLU172 3.4 45.3 1.0
CG B:ASP177 3.4 47.4 1.0
C B:CYS175 3.5 44.5 1.0
C B:ALA58 3.5 36.8 1.0
N B:ASP177 3.7 37.9 1.0
CA B:GLU172 3.9 41.1 1.0
CG B:GLU275 4.1 41.4 1.0
OE1 B:GLU275 4.1 39.5 1.0
CA B:ILE176 4.1 39.5 1.0
CB B:ASP177 4.2 38.5 1.0
N B:ILE176 4.2 40.6 1.0
O B:HOH760 4.3 40.3 1.0
CA B:ALA58 4.3 32.9 1.0
OD1 B:ASP177 4.3 49.4 1.0
C B:ILE176 4.3 43.7 1.0
CB B:GLU172 4.4 40.5 1.0
N B:CYS175 4.4 44.7 1.0
N B:GLY59 4.5 34.2 1.0
O B:GLY59 4.5 38.6 1.0
N B:LYS173 4.5 42.5 1.0
CA B:CYS175 4.5 45.0 1.0
CB B:ALA58 4.5 32.9 1.0
CA B:ASP177 4.6 37.7 1.0
O B:LYS173 4.7 48.3 1.0
CA B:GLY59 4.7 35.4 1.0
C B:LYS173 4.8 48.0 1.0
CA B:LYS173 4.8 43.0 1.0
C B:GLY59 4.8 39.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 23:21:13 2020

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