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Potassium in PDB 3oyt: 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92

Protein crystallography data

The structure of 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92, PDB code: 3oyt was solved by A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.Peterson, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.58 / 1.84
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 109.649, 114.613, 59.157, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 19.3

Potassium Binding Sites:

The binding sites of Potassium atom in the 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92 (pdb code 3oyt). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92, PDB code: 3oyt:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 3oyt

Go back to Potassium Binding Sites List in 3oyt
Potassium binding site 1 out of 2 in the 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K408

b:15.3
occ:1.00
OE1 A:GLU343 2.7 19.6 1.0
OD1 A:ASN297 2.7 13.9 1.0
O A:ASN389 2.7 12.2 1.0
O A:ASN297 2.8 10.1 1.0
OG A:SER388 2.9 11.5 1.0
O A:VAL298 2.9 13.4 1.0
C A:VAL298 3.5 13.7 1.0
C A:ASN297 3.5 11.6 1.0
CD A:GLU343 3.6 16.4 1.0
N A:ASN389 3.6 12.0 1.0
CB A:GLU343 3.7 11.4 1.0
CG A:ASN297 3.7 13.3 1.0
C A:ASN389 3.7 13.2 1.0
O A:HOH580 3.9 25.5 1.0
N A:HIS299 4.0 14.6 1.0
CG A:GLU343 4.1 11.6 1.0
CB A:SER388 4.1 11.6 1.0
CB A:ASN297 4.1 12.1 1.0
N A:VAL298 4.2 12.0 1.0
CA A:HIS299 4.2 16.2 1.0
C A:SER388 4.2 12.2 1.0
CA A:ASN389 4.2 13.3 1.0
O A:HOH551 4.2 16.2 1.0
CA A:SER388 4.3 11.5 1.0
CA A:VAL298 4.3 13.0 1.0
CA A:ASN297 4.4 11.7 1.0
NZ A:LYS329 4.6 19.7 1.0
OE2 A:GLU343 4.6 19.0 1.0
O A:HOH518 4.6 18.5 1.0
OG A:SER390 4.7 15.3 1.0
N A:SER390 4.8 14.0 1.0
CB A:ASN389 4.9 13.7 1.0
ND2 A:ASN297 4.9 15.0 1.0
O A:HOH482 4.9 31.9 1.0

Potassium binding site 2 out of 2 in 3oyt

Go back to Potassium Binding Sites List in 3oyt
Potassium binding site 2 out of 2 in the 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K408

b:16.0
occ:1.00
OE1 B:GLU343 2.7 20.0 1.0
O B:ASN389 2.7 13.7 1.0
OD1 B:ASN297 2.7 15.5 1.0
OG B:SER388 2.8 15.3 1.0
O B:ASN297 2.9 12.9 1.0
O B:VAL298 3.1 14.1 1.0
N B:ASN389 3.6 14.3 1.0
C B:ASN297 3.6 12.7 1.0
C B:VAL298 3.6 14.3 1.0
CD B:GLU343 3.6 18.8 1.0
CB B:GLU343 3.7 12.7 1.0
C B:ASN389 3.7 14.8 1.0
CG B:ASN297 3.7 15.6 1.0
O B:HOH489 3.9 24.3 1.0
CB B:SER388 4.0 14.1 1.0
O B:HOH492 4.1 14.6 1.0
CG B:GLU343 4.1 15.2 1.0
CB B:ASN297 4.1 12.9 1.0
C B:SER388 4.2 14.4 1.0
N B:HIS299 4.2 15.4 1.0
CA B:ASN389 4.2 14.7 1.0
CA B:SER388 4.2 14.1 1.0
N B:VAL298 4.3 13.3 1.0
CA B:HIS299 4.3 16.2 1.0
CA B:VAL298 4.4 13.6 1.0
CA B:ASN297 4.5 13.1 1.0
NZ B:LYS329 4.6 20.3 1.0
O B:HOH534 4.6 13.3 1.0
OG B:SER390 4.6 16.9 1.0
OE2 B:GLU343 4.6 21.3 1.0
N B:SER390 4.8 15.2 1.0
CB B:ASN389 4.9 15.7 1.0
ND2 B:ASN297 4.9 16.2 1.0

Reference:

A.S.Halavaty, Z.Wawrzak, O.Onopriyenko, S.Peterson, A.Savchenko, W.F.Anderson. 1.84 Angstrom Resolution Crystal Structure of 3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From Yersinia Pestis CO92 To Be Published.
Page generated: Mon Aug 12 08:58:59 2024

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