Potassium in PDB 3m63: Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2

The structure of Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2, PDB code: 3m63 was solved by P.Haenzelmann, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	73.50 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	65.130, 125.700, 181.210, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 27

The binding sites of Potassium atom in the Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2 (pdb code 3m63). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2, PDB code: 3m63:

Potassium binding site 1 out of 1 in the Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of UFD2 in Complex with the Ubiquitin-Like (Ubl) Domain of DSK2 within 5.0Å range: probe atom residue distance (Å) B Occ A:K963 b:72.3 occ:1.00 O A:HOH1138 2.4 59.1 1.0 O A:PRO491 2.6 37.8 1.0 OH6 A:1PE962 3.0 77.4 1.0 OH3 A:1PE962 3.1 84.2 1.0 OH2 A:1PE962 3.1 73.2 1.0 OH7 A:1PE962 3.1 77.8 1.0 OH5 A:1PE962 3.2 75.0 1.0 OH4 A:1PE962 3.5 82.3 1.0 C12 A:1PE962 3.5 77.5 1.0 C25 A:1PE962 3.7 75.5 1.0 C16 A:1PE962 3.7 77.5 1.0 C24 A:1PE962 3.7 77.0 1.0 C A:PRO491 3.8 39.1 1.0 C26 A:1PE962 3.8 78.0 1.0 C13 A:1PE962 3.9 82.6 1.0 C22 A:1PE962 3.9 78.9 1.0 C15 A:1PE962 3.9 77.8 1.0 C23 A:1PE962 3.9 82.8 1.0 C14 A:1PE962 4.0 74.9 1.0 CB A:PRO491 4.2 36.2 1.0 CA A:PRO491 4.6 37.7 1.0 N A:PHE492 4.8 40.6 1.0 CA A:PHE492 4.9 42.7 1.0

P.Hanzelmann, J.Stingele, K.Hofmann, H.Schindelin, S.Raasi. The Yeast E4 Ubiquitin Ligase UFD2 Interacts with the Ubiquitin-Like Domains of RAD23 and DSK2 Via A Novel and Distinct Ubiquitin-Like Binding Domain. J.Biol.Chem. V. 285 20390 2010.
ISSN: ISSN 0021-9258
PubMed: 20427284
DOI: 10.1074/JBC.M110.112532