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Potassium in PDB 3l01: Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi

Enzymatic activity of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi

All present enzymatic activity of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi:
2.4.1.21;

Protein crystallography data

The structure of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi, PDB code: 3l01 was solved by A.Diaz, C.Martinez-Pons, I.Fita, J.C.Ferrer, J.J.Guinovart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.91 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 103.604, 119.017, 141.101, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 22.8

Other elements in 3l01:

The structure of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi (pdb code 3l01). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi, PDB code: 3l01:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 3l01

Go back to Potassium Binding Sites List in 3l01
Potassium binding site 1 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K5600

b:40.8
occ:1.00
 OE2 A:GLU339 3.0 36.9 1.0
N A:GLY342 3.6 27.5 1.0
O A:HOH470 3.6 11.0 1.0
N A:PHE341 4.0 23.8 1.0
CB A:PHE341 4.0 19.2 1.0
N A:LEU343 4.1 19.9 1.0
CD A:GLU339 4.2 54.0 1.0
O A:HOH472 4.2 40.8 1.0
CA A:PHE341 4.3 23.0 1.0
C A:PHE341 4.4 28.5 1.0
CA A:GLY342 4.5 24.8 1.0
CB A:LEU343 4.6 22.6 1.0
CG A:GLU339 4.7 48.8 1.0
CD A:PRO340 4.8 25.5 1.0
C A:GLY342 4.8 24.4 1.0
N A:PRO340 4.8 25.8 1.0
CB A:PRO340 5.0 24.3 1.0
CD1 A:PHE341 5.0 19.1 1.0
CG A:PRO340 5.0 22.6 1.0

Potassium binding site 2 out of 6 in 3l01

Go back to Potassium Binding Sites List in 3l01
Potassium binding site 2 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K5602

b:24.8
occ:1.00
 N A:GLU60 3.6 33.4 1.0
CG B:LEU11 3.7 24.9 1.0
CG A:GLU60 3.9 40.5 1.0
CA B:PRO12 4.0 24.3 1.0
CA A:GLU59 4.0 33.0 1.0
CB A:GLU60 4.1 35.6 1.0
CB B:PRO12 4.2 23.0 1.0
CB B:LEU11 4.2 21.4 1.0
CD2 B:LEU11 4.3 24.0 1.0
C A:GLU59 4.3 32.5 1.0
CD A:GLU60 4.3 46.7 1.0
CB A:GLU59 4.5 33.8 1.0
CA A:GLU60 4.5 34.1 1.0
O A:GLY58 4.5 33.0 1.0
CD1 B:LEU11 4.6 25.1 1.0
N B:PRO12 4.7 23.2 1.0
OE2 A:GLU60 4.8 49.0 1.0
OE1 A:GLU60 4.8 46.8 1.0
CA B:LEU11 4.9 21.7 1.0
C B:PRO12 5.0 27.5 1.0
O B:PRO12 5.0 27.6 1.0

Potassium binding site 3 out of 6 in 3l01

Go back to Potassium Binding Sites List in 3l01
Potassium binding site 3 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K5607

b:63.2
occ:1.00
 NE A:ARG195 3.5 35.9 1.0
NH2 A:ARG195 4.0 38.9 1.0
CZ A:ARG195 4.2 36.7 1.0
OH A:TYR214 4.3 32.6 1.0
CD A:ARG195 4.5 29.9 1.0
CE2 A:TYR214 4.5 23.1 1.0

Potassium binding site 4 out of 6 in 3l01

Go back to Potassium Binding Sites List in 3l01
Potassium binding site 4 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5601

b:38.8
occ:1.00
 OE2 B:GLU339 2.9 40.0 1.0
N B:GLY342 3.4 29.4 1.0
O B:HOH445 3.7 42.2 1.0
N B:PHE341 3.7 25.8 1.0
CD B:GLU339 3.9 58.0 1.0
CB B:PHE341 4.0 21.2 1.0
N B:LEU343 4.1 21.4 1.0
CA B:PHE341 4.2 25.2 1.0
C B:PHE341 4.2 30.2 1.0
CA B:GLY342 4.3 26.6 1.0
CG B:GLU339 4.3 52.4 1.0
CD B:PRO340 4.5 28.6 1.0
N B:PRO340 4.7 29.1 1.0
C B:GLY342 4.7 26.1 1.0
CB B:LEU343 4.8 23.2 1.0
C B:PRO340 4.8 24.8 1.0
CB B:PRO340 4.8 27.4 1.0
OE1 B:GLU339 4.8 49.9 1.0
CG B:PRO340 4.8 25.7 1.0

Potassium binding site 5 out of 6 in 3l01

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Potassium binding site 5 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5605

b:46.0
occ:1.00
 N B:GLU60 3.7 36.5 1.0
CA B:GLU59 4.0 36.1 1.0
CG B:GLU60 4.2 44.4 1.0
C B:GLU59 4.4 36.0 1.0
O B:GLY58 4.4 36.7 1.0
CB B:GLU60 4.4 38.5 1.0
CB B:GLU59 4.5 37.7 1.0
CD B:GLU60 4.7 51.4 1.0
CA B:GLU60 4.7 38.1 1.0
OE1 B:GLU60 4.9 51.3 1.0

Potassium binding site 6 out of 6 in 3l01

Go back to Potassium Binding Sites List in 3l01
Potassium binding site 6 out of 6 in the Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Monomeric Glycogen Synthase From Pyrococcus Abyssi within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5606

b:58.3
occ:1.00
 CE1 B:HIS34 3.5 28.8 1.0
CG2 B:VAL422 3.8 30.0 1.0
CG1 B:VAL422 3.8 29.5 1.0
CB B:VAL422 3.8 27.7 1.0
CG B:GLU419 3.9 25.5 1.0
CD1 B:LEU32 3.9 28.9 1.0
CA B:GLU419 4.2 32.9 1.0
NE2 B:HIS34 4.2 33.1 1.0
CB B:GLU419 4.5 24.7 1.0
ND1 B:HIS34 4.6 30.5 1.0
CB B:LEU32 4.6 28.4 1.0
CG B:LEU32 4.7 29.5 1.0
O B:GLU419 4.8 33.3 1.0
CD2 B:LEU32 4.8 26.6 1.0
C B:GLU419 5.0 29.3 1.0

Reference:

A.Diaz, C.Martinez-Pons, I.Fita, J.C.Ferrer, J.J.Guinovart. Processivity and Subcellular Localization of Glycogen Synthase Depend on A Non-Catalytic High Affinity Glycogen-Binding Site. J.Biol.Chem. V. 286 18505 2011.
ISSN: ISSN 0021-9258
PubMed: 21464127
DOI: 10.1074/JBC.M111.236109
Page generated: Mon Aug 12 08:42:43 2024

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