Potassium in PDB 3is7: Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Protein crystallography data
The structure of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution, PDB code: 3is7
was solved by
S.Lovell,
S.K.Weeratunga,
K.P.Battaile,
M.Rivera,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.04 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
125.806,
202.756,
207.546,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.3 /
24.4
|
Other elements in 3is7:
The structure of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
(pdb code 3is7). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the
Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution, PDB code: 3is7:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
Potassium binding site 1 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 1 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K160
b:22.3
occ:1.00
|
OE1
|
M:GLN151
|
2.9
|
16.5
|
1.0
|
OE1
|
L:GLN151
|
2.9
|
18.1
|
1.0
|
OD1
|
A:ASN148
|
2.9
|
23.3
|
1.0
|
OE1
|
A:GLN151
|
2.9
|
16.1
|
1.0
|
OE1
|
X:GLN151
|
2.9
|
22.1
|
1.0
|
OD1
|
L:ASN148
|
3.0
|
21.4
|
1.0
|
OD1
|
M:ASN148
|
3.1
|
16.3
|
1.0
|
OD1
|
X:ASN148
|
3.1
|
24.7
|
1.0
|
O
|
X:HOH715
|
3.6
|
39.8
|
1.0
|
CG
|
A:ASN148
|
3.7
|
23.9
|
1.0
|
CG
|
L:ASN148
|
3.7
|
22.4
|
1.0
|
CD
|
M:GLN151
|
3.8
|
17.4
|
1.0
|
CG
|
M:ASN148
|
3.8
|
21.0
|
1.0
|
CD
|
A:GLN151
|
3.8
|
16.7
|
1.0
|
CG
|
X:ASN148
|
3.8
|
23.4
|
1.0
|
CD
|
X:GLN151
|
3.9
|
21.9
|
1.0
|
CD
|
L:GLN151
|
3.9
|
20.0
|
1.0
|
NE2
|
M:GLN151
|
3.9
|
16.4
|
1.0
|
NE2
|
A:GLN151
|
4.0
|
17.9
|
1.0
|
ND2
|
A:ASN148
|
4.0
|
23.8
|
1.0
|
NE2
|
X:GLN151
|
4.0
|
18.3
|
1.0
|
ND2
|
L:ASN148
|
4.1
|
19.5
|
1.0
|
ND2
|
X:ASN148
|
4.1
|
22.4
|
1.0
|
ND2
|
M:ASN148
|
4.1
|
19.5
|
1.0
|
NE2
|
L:GLN151
|
4.1
|
18.6
|
1.0
|
CB
|
A:ASN148
|
4.9
|
23.8
|
1.0
|
CB
|
L:ASN148
|
4.9
|
23.0
|
1.0
|
CB
|
M:ASN148
|
4.9
|
22.5
|
1.0
|
CB
|
X:ASN148
|
4.9
|
21.4
|
1.0
|
|
Potassium binding site 2 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 2 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K159
b:20.3
occ:1.00
|
OE1
|
B:GLN151
|
2.9
|
14.9
|
1.0
|
OE1
|
D:GLN151
|
2.9
|
19.0
|
1.0
|
OE1
|
H:GLN151
|
2.9
|
17.1
|
1.0
|
OD1
|
B:ASN148
|
3.0
|
22.2
|
1.0
|
OE1
|
F:GLN151
|
3.0
|
17.4
|
1.0
|
OD1
|
D:ASN148
|
3.0
|
21.5
|
1.0
|
OD1
|
F:ASN148
|
3.0
|
19.6
|
1.0
|
OD1
|
H:ASN148
|
3.0
|
15.7
|
1.0
|
CG
|
B:ASN148
|
3.8
|
21.2
|
1.0
|
CG
|
F:ASN148
|
3.8
|
19.7
|
1.0
|
CD
|
B:GLN151
|
3.8
|
19.4
|
1.0
|
CG
|
H:ASN148
|
3.8
|
18.5
|
1.0
|
CD
|
H:GLN151
|
3.8
|
18.6
|
1.0
|
CG
|
D:ASN148
|
3.9
|
21.1
|
1.0
|
CD
|
D:GLN151
|
3.9
|
19.0
|
1.0
|
CD
|
F:GLN151
|
3.9
|
18.6
|
1.0
|
NE2
|
B:GLN151
|
4.0
|
17.9
|
1.0
|
NE2
|
H:GLN151
|
4.0
|
16.5
|
1.0
|
NE2
|
F:GLN151
|
4.1
|
20.7
|
1.0
|
NE2
|
D:GLN151
|
4.1
|
17.6
|
1.0
|
ND2
|
H:ASN148
|
4.2
|
20.3
|
1.0
|
ND2
|
F:ASN148
|
4.2
|
17.6
|
1.0
|
ND2
|
B:ASN148
|
4.2
|
21.4
|
1.0
|
ND2
|
D:ASN148
|
4.3
|
16.7
|
1.0
|
CB
|
B:ASN148
|
4.9
|
18.1
|
1.0
|
CB
|
F:ASN148
|
4.9
|
18.3
|
1.0
|
CB
|
H:ASN148
|
5.0
|
17.1
|
1.0
|
CB
|
D:ASN148
|
5.0
|
21.0
|
1.0
|
|
Potassium binding site 3 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 3 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K160
b:23.9
occ:1.00
|
OE1
|
K:GLN151
|
2.9
|
22.6
|
1.0
|
OE1
|
S:GLN151
|
2.9
|
21.3
|
1.0
|
OE1
|
C:GLN151
|
2.9
|
19.2
|
1.0
|
OE1
|
U:GLN151
|
2.9
|
25.0
|
1.0
|
OD1
|
K:ASN148
|
2.9
|
18.8
|
1.0
|
OD1
|
S:ASN148
|
3.0
|
23.9
|
1.0
|
OD1
|
C:ASN148
|
3.0
|
23.8
|
1.0
|
OD1
|
U:ASN148
|
3.0
|
21.4
|
1.0
|
O
|
K:HOH160
|
3.6
|
37.0
|
1.0
|
CG
|
K:ASN148
|
3.8
|
21.9
|
1.0
|
CG
|
U:ASN148
|
3.8
|
21.9
|
1.0
|
CD
|
K:GLN151
|
3.8
|
22.1
|
1.0
|
CG
|
S:ASN148
|
3.8
|
24.0
|
1.0
|
CG
|
C:ASN148
|
3.8
|
24.8
|
1.0
|
CD
|
S:GLN151
|
3.8
|
23.0
|
1.0
|
CD
|
C:GLN151
|
3.8
|
20.1
|
1.0
|
CD
|
U:GLN151
|
3.9
|
20.7
|
1.0
|
NE2
|
K:GLN151
|
4.0
|
19.6
|
1.0
|
NE2
|
S:GLN151
|
4.0
|
21.2
|
1.0
|
ND2
|
U:ASN148
|
4.1
|
21.8
|
1.0
|
NE2
|
U:GLN151
|
4.1
|
19.4
|
1.0
|
ND2
|
K:ASN148
|
4.1
|
19.6
|
1.0
|
NE2
|
C:GLN151
|
4.1
|
18.3
|
1.0
|
ND2
|
S:ASN148
|
4.1
|
27.9
|
1.0
|
ND2
|
C:ASN148
|
4.2
|
25.2
|
1.0
|
CB
|
K:ASN148
|
4.9
|
24.4
|
1.0
|
CB
|
S:ASN148
|
4.9
|
23.5
|
1.0
|
CB
|
U:ASN148
|
4.9
|
24.2
|
1.0
|
CB
|
C:ASN148
|
5.0
|
23.4
|
1.0
|
|
Potassium binding site 4 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 4 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K159
b:27.1
occ:1.00
|
OE1
|
J:GLN151
|
2.8
|
22.4
|
1.0
|
OE1
|
E:GLN151
|
2.9
|
18.6
|
1.0
|
OE1
|
Q:GLN151
|
2.9
|
27.7
|
1.0
|
OD1
|
E:ASN148
|
2.9
|
27.2
|
1.0
|
OE1
|
V:GLN151
|
2.9
|
20.4
|
1.0
|
OD1
|
V:ASN148
|
3.0
|
25.9
|
1.0
|
OD1
|
Q:ASN148
|
3.1
|
24.3
|
1.0
|
OD1
|
J:ASN148
|
3.1
|
27.4
|
1.0
|
CD
|
J:GLN151
|
3.7
|
21.1
|
1.0
|
CG
|
E:ASN148
|
3.7
|
28.3
|
1.0
|
CD
|
E:GLN151
|
3.8
|
19.9
|
1.0
|
CG
|
V:ASN148
|
3.8
|
25.6
|
1.0
|
CG
|
Q:ASN148
|
3.8
|
25.6
|
1.0
|
CD
|
V:GLN151
|
3.9
|
24.9
|
1.0
|
NE2
|
J:GLN151
|
3.9
|
19.6
|
1.0
|
CG
|
J:ASN148
|
3.9
|
25.9
|
1.0
|
CD
|
Q:GLN151
|
3.9
|
26.7
|
1.0
|
NE2
|
E:GLN151
|
3.9
|
20.6
|
1.0
|
NE2
|
V:GLN151
|
4.1
|
22.2
|
1.0
|
ND2
|
V:ASN148
|
4.1
|
25.0
|
1.0
|
ND2
|
Q:ASN148
|
4.1
|
23.2
|
1.0
|
ND2
|
E:ASN148
|
4.2
|
30.8
|
1.0
|
NE2
|
Q:GLN151
|
4.2
|
26.2
|
1.0
|
ND2
|
J:ASN148
|
4.3
|
27.4
|
1.0
|
CB
|
Q:ASN148
|
4.9
|
26.6
|
1.0
|
CB
|
E:ASN148
|
4.9
|
25.8
|
1.0
|
CB
|
V:ASN148
|
5.0
|
25.1
|
1.0
|
CB
|
J:ASN148
|
5.0
|
27.9
|
1.0
|
|
Potassium binding site 5 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 5 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K159
b:23.0
occ:1.00
|
OE1
|
O:GLN151
|
2.8
|
23.7
|
1.0
|
OE1
|
W:GLN151
|
2.8
|
16.7
|
1.0
|
OE1
|
G:GLN151
|
2.9
|
19.4
|
1.0
|
OE1
|
I:GLN151
|
2.9
|
22.9
|
1.0
|
OD1
|
O:ASN148
|
3.0
|
20.9
|
1.0
|
OD1
|
W:ASN148
|
3.0
|
19.8
|
1.0
|
OD1
|
I:ASN148
|
3.1
|
20.5
|
1.0
|
OD1
|
G:ASN148
|
3.1
|
25.1
|
1.0
|
O
|
G:HOH246
|
3.7
|
39.0
|
1.0
|
CD
|
O:GLN151
|
3.8
|
23.8
|
1.0
|
CD
|
G:GLN151
|
3.8
|
22.9
|
1.0
|
CG
|
O:ASN148
|
3.8
|
23.5
|
1.0
|
CG
|
W:ASN148
|
3.8
|
22.1
|
1.0
|
CD
|
W:GLN151
|
3.8
|
16.6
|
1.0
|
CG
|
G:ASN148
|
3.8
|
25.5
|
1.0
|
CG
|
I:ASN148
|
3.8
|
24.0
|
1.0
|
CD
|
I:GLN151
|
3.9
|
20.5
|
1.0
|
NE2
|
G:GLN151
|
3.9
|
24.4
|
1.0
|
NE2
|
O:GLN151
|
3.9
|
21.1
|
1.0
|
NE2
|
W:GLN151
|
4.0
|
18.4
|
1.0
|
NE2
|
I:GLN151
|
4.1
|
18.6
|
1.0
|
ND2
|
G:ASN148
|
4.1
|
23.3
|
1.0
|
ND2
|
O:ASN148
|
4.1
|
22.5
|
1.0
|
ND2
|
I:ASN148
|
4.2
|
22.0
|
1.0
|
ND2
|
W:ASN148
|
4.2
|
23.8
|
1.0
|
CB
|
O:ASN148
|
4.8
|
22.5
|
1.0
|
CB
|
W:ASN148
|
4.9
|
23.0
|
1.0
|
CB
|
G:ASN148
|
4.9
|
25.5
|
1.0
|
CB
|
I:ASN148
|
5.0
|
21.4
|
1.0
|
|
Potassium binding site 6 out
of 6 in 3is7
Go back to
Potassium Binding Sites List in 3is7
Potassium binding site 6 out
of 6 in the Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Structure of Mineralized Bfrb From Pseudomonas Aeruginosa to 2.1A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:K160
b:26.6
occ:1.00
|
OE1
|
R:GLN151
|
2.9
|
28.2
|
1.0
|
OD1
|
N:ASN148
|
2.9
|
23.1
|
1.0
|
OE1
|
T:GLN151
|
3.0
|
19.0
|
1.0
|
OE1
|
P:GLN151
|
3.0
|
20.1
|
1.0
|
OD1
|
R:ASN148
|
3.0
|
27.2
|
1.0
|
OD1
|
P:ASN148
|
3.0
|
22.4
|
1.0
|
OE1
|
N:GLN151
|
3.1
|
22.2
|
1.0
|
OD1
|
T:ASN148
|
3.1
|
26.0
|
1.0
|
CG
|
N:ASN148
|
3.7
|
26.0
|
1.0
|
CD
|
R:GLN151
|
3.8
|
26.6
|
1.0
|
CG
|
R:ASN148
|
3.8
|
25.6
|
1.0
|
CG
|
P:ASN148
|
3.8
|
25.6
|
1.0
|
CD
|
P:GLN151
|
3.8
|
20.5
|
1.0
|
CG
|
T:ASN148
|
3.9
|
25.6
|
1.0
|
CD
|
T:GLN151
|
3.9
|
21.0
|
1.0
|
NE2
|
P:GLN151
|
3.9
|
19.5
|
1.0
|
CD
|
N:GLN151
|
4.0
|
22.2
|
1.0
|
NE2
|
R:GLN151
|
4.0
|
25.1
|
1.0
|
ND2
|
N:ASN148
|
4.0
|
23.7
|
1.0
|
NE2
|
T:GLN151
|
4.1
|
21.4
|
1.0
|
NE2
|
N:GLN151
|
4.1
|
20.1
|
1.0
|
ND2
|
R:ASN148
|
4.2
|
26.3
|
1.0
|
ND2
|
T:ASN148
|
4.2
|
20.2
|
1.0
|
ND2
|
P:ASN148
|
4.3
|
25.0
|
1.0
|
CB
|
N:ASN148
|
4.9
|
25.9
|
1.0
|
CB
|
R:ASN148
|
5.0
|
25.8
|
1.0
|
CB
|
P:ASN148
|
5.0
|
23.6
|
1.0
|
CB
|
T:ASN148
|
5.0
|
25.7
|
1.0
|
|
Reference:
S.K.Weeratunga,
S.Lovell,
H.Yao,
K.P.Battaile,
C.J.Fischer,
C.E.Gee,
M.Rivera.
Structural Studies of Bacterioferritin B From Pseudomonas Aeruginosa Suggest A Gating Mechanism For Iron Uptake Via the Ferroxidase Center Biochemistry V. 49 1160 2010.
ISSN: ISSN 0006-2960
PubMed: 20067302
DOI: 10.1021/BI9015204
Page generated: Mon Aug 12 08:37:58 2024
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