Potassium in PDB 3ifx: Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1
Protein crystallography data
The structure of Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1, PDB code: 3ifx
was solved by
J.A.Cieslak,
P.J.Focia,
A.Gross,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
24.84 /
3.56
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
130.970,
76.630,
112.970,
90.00,
125.83,
90.00
|
R / Rfree (%)
|
27.1 /
30.2
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1
(pdb code 3ifx). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1, PDB code: 3ifx:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 3ifx
Go back to
Potassium Binding Sites List in 3ifx
Potassium binding site 1 out
of 2 in the Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K202
b:2.0
occ:1.00
|
K
|
B:K201
|
2.4
|
29.2
|
1.0
|
O
|
B:THR75
|
2.5
|
59.6
|
1.0
|
O
|
D:THR75
|
2.7
|
59.6
|
1.0
|
O
|
C:THR75
|
2.8
|
0.7
|
1.0
|
OG1
|
B:THR75
|
2.9
|
58.1
|
1.0
|
O
|
A:THR75
|
3.0
|
0.6
|
1.0
|
OG1
|
D:THR75
|
3.1
|
58.1
|
1.0
|
OG1
|
C:THR75
|
3.4
|
98.6
|
1.0
|
OG1
|
A:THR75
|
3.4
|
43.8
|
1.0
|
C
|
B:THR75
|
3.5
|
60.3
|
1.0
|
CB
|
B:THR75
|
3.6
|
57.5
|
1.0
|
CG2
|
A:THR75
|
3.7
|
61.2
|
1.0
|
C
|
D:THR75
|
3.8
|
60.2
|
1.0
|
CB
|
D:THR75
|
3.8
|
57.6
|
1.0
|
C41
|
B:TBA203
|
3.9
|
2.0
|
0.5
|
C
|
C:THR75
|
4.0
|
55.8
|
1.0
|
C
|
A:THR75
|
4.1
|
2.0
|
1.0
|
CG2
|
C:THR75
|
4.1
|
85.3
|
1.0
|
CB
|
A:THR75
|
4.1
|
2.0
|
1.0
|
CA
|
B:THR75
|
4.2
|
58.0
|
1.0
|
CB
|
C:THR75
|
4.3
|
5.2
|
1.0
|
CA
|
D:THR75
|
4.5
|
58.0
|
1.0
|
N
|
B:VAL76
|
4.5
|
63.4
|
1.0
|
C21
|
B:TBA203
|
4.5
|
0.8
|
0.5
|
O
|
C:THR74
|
4.6
|
4.9
|
1.0
|
CA
|
B:VAL76
|
4.7
|
66.4
|
1.0
|
N
|
D:VAL76
|
4.8
|
63.4
|
1.0
|
O
|
D:THR74
|
4.8
|
53.4
|
1.0
|
CA
|
A:THR75
|
4.8
|
2.0
|
1.0
|
O
|
B:VAL76
|
4.8
|
67.2
|
1.0
|
CA
|
C:THR75
|
4.8
|
2.0
|
1.0
|
N1
|
B:TBA203
|
4.9
|
9.5
|
0.5
|
O
|
A:VAL76
|
4.9
|
50.6
|
1.0
|
O
|
A:THR74
|
4.9
|
6.3
|
1.0
|
C42
|
B:TBA203
|
4.9
|
13.1
|
0.5
|
N
|
C:VAL76
|
4.9
|
65.6
|
1.0
|
CA
|
D:VAL76
|
4.9
|
66.3
|
1.0
|
O
|
C:VAL76
|
5.0
|
67.0
|
1.0
|
CG2
|
B:THR75
|
5.0
|
57.1
|
1.0
|
CA
|
C:VAL76
|
5.0
|
0.8
|
1.0
|
|
Potassium binding site 2 out
of 2 in 3ifx
Go back to
Potassium Binding Sites List in 3ifx
Potassium binding site 2 out
of 2 in the Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of the Spin-Labeled Kcsa Mutant V48R1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K201
b:29.2
occ:1.00
|
O
|
B:THR75
|
2.2
|
59.6
|
1.0
|
K
|
A:K202
|
2.4
|
2.0
|
1.0
|
O
|
D:THR75
|
2.4
|
59.6
|
1.0
|
O
|
B:VAL76
|
2.7
|
67.2
|
1.0
|
O
|
A:THR75
|
2.7
|
0.6
|
1.0
|
O
|
C:THR75
|
2.8
|
0.7
|
1.0
|
O
|
A:VAL76
|
2.9
|
50.6
|
1.0
|
O
|
C:VAL76
|
2.9
|
67.0
|
1.0
|
O
|
D:VAL76
|
3.1
|
67.2
|
1.0
|
C
|
B:THR75
|
3.3
|
60.3
|
1.0
|
C
|
B:VAL76
|
3.4
|
67.5
|
1.0
|
CA
|
B:VAL76
|
3.5
|
66.4
|
1.0
|
C
|
D:THR75
|
3.5
|
60.2
|
1.0
|
C
|
C:VAL76
|
3.7
|
83.7
|
1.0
|
C
|
D:VAL76
|
3.8
|
67.5
|
1.0
|
CA
|
D:VAL76
|
3.8
|
66.3
|
1.0
|
C
|
A:VAL76
|
3.8
|
71.9
|
1.0
|
C
|
C:THR75
|
3.8
|
55.8
|
1.0
|
N
|
B:VAL76
|
3.9
|
63.4
|
1.0
|
C
|
A:THR75
|
3.9
|
2.0
|
1.0
|
CA
|
C:VAL76
|
3.9
|
0.8
|
1.0
|
OG1
|
C:THR75
|
4.0
|
98.6
|
1.0
|
CA
|
A:VAL76
|
4.0
|
97.6
|
1.0
|
N
|
D:VAL76
|
4.1
|
63.4
|
1.0
|
O
|
D:HOH204
|
4.1
|
8.0
|
1.0
|
OG1
|
A:THR75
|
4.3
|
43.8
|
1.0
|
N
|
C:VAL76
|
4.3
|
65.6
|
1.0
|
OG1
|
B:THR75
|
4.4
|
58.1
|
1.0
|
N
|
A:VAL76
|
4.4
|
19.8
|
1.0
|
OG1
|
D:THR75
|
4.6
|
58.1
|
1.0
|
CA
|
B:THR75
|
4.6
|
58.0
|
1.0
|
N
|
B:GLY77
|
4.7
|
70.0
|
1.0
|
N
|
C:GLY77
|
4.7
|
0.7
|
1.0
|
CA
|
D:THR75
|
4.8
|
58.0
|
1.0
|
CB
|
B:THR75
|
4.8
|
57.5
|
1.0
|
CB
|
D:THR75
|
4.8
|
57.6
|
1.0
|
CB
|
B:VAL76
|
4.9
|
66.8
|
1.0
|
N
|
D:GLY77
|
5.0
|
70.0
|
1.0
|
N
|
A:GLY77
|
5.0
|
73.4
|
1.0
|
|
Reference:
J.A.Cieslak,
P.J.Focia,
A.Gross.
Electron Spin-Echo Envelope Modulation (Eseem) Reveals Water and Phosphate Interactions with the Kcsa Potassium Channel Biochemistry V. 49 1486 2010.
ISSN: ISSN 0006-2960
PubMed: 20092291
DOI: 10.1021/BI9016523
Page generated: Mon Aug 12 08:32:20 2024
|