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Potassium in PDB 3hhe: Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae

Enzymatic activity of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae

All present enzymatic activity of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae:
5.3.1.6;

Protein crystallography data

The structure of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae, PDB code: 3hhe was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.190, 79.584, 151.127, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.9

Other elements in 3hhe:

The structure of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae (pdb code 3hhe). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae, PDB code: 3hhe:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 3hhe

Go back to Potassium Binding Sites List in 3hhe
Potassium binding site 1 out of 2 in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K500

b:30.5
occ:1.00
O A:LEU220 2.6 25.1 1.0
O A:VAL225 2.6 23.9 1.0
O A:ILE222 2.8 23.9 1.0
OE1 B:GLU227 2.9 27.1 1.0
O B:HOH290 3.0 26.5 1.0
O B:VAL226 3.5 23.4 1.0
C A:LEU220 3.7 25.3 1.0
CD B:GLU227 3.7 27.8 1.0
C A:ILE222 3.7 23.6 1.0
C A:VAL225 3.8 23.4 1.0
O A:PRO223 3.8 23.0 1.0
CG B:GLU227 3.9 25.7 1.0
O A:HOH263 3.9 34.2 1.0
CD2 B:LEU220 4.0 24.2 1.0
C A:PRO223 4.1 23.0 1.0
CA A:PRO223 4.1 23.3 1.0
N A:VAL225 4.3 23.7 1.0
N A:PRO223 4.3 23.7 1.0
CA A:LEU220 4.4 24.9 1.0
CA A:VAL225 4.4 23.5 1.0
N A:ILE222 4.5 24.0 1.0
CB A:VAL225 4.6 23.6 1.0
O B:HOH261 4.6 35.2 1.0
C A:ALA221 4.6 24.7 1.0
C B:VAL226 4.6 23.1 1.0
N A:ALA221 4.7 24.4 1.0
O A:LEU219 4.8 24.3 1.0
CA A:ILE222 4.8 23.9 1.0
OE2 B:GLU227 4.8 27.4 1.0
N A:VAL226 4.8 23.5 1.0
N A:GLY224 4.9 22.5 1.0
CA A:ALA221 4.9 24.9 1.0
CG1 A:VAL225 4.9 23.0 1.0
O A:ALA221 4.9 24.7 1.0

Potassium binding site 2 out of 2 in 3hhe

Go back to Potassium Binding Sites List in 3hhe
Potassium binding site 2 out of 2 in the Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K500

b:32.3
occ:1.00
O B:VAL225 2.7 23.6 1.0
O B:LEU220 2.7 27.0 1.0
OE2 A:GLU227 2.8 25.6 1.0
O B:ILE222 3.0 27.9 1.0
O B:HOH290 3.2 26.5 1.0
O A:VAL226 3.3 24.6 1.0
O B:HOH316 3.6 39.5 1.0
CD A:GLU227 3.7 27.3 1.0
O B:PRO223 3.7 26.1 1.0
C B:VAL225 3.8 23.3 1.0
C B:LEU220 3.8 27.5 1.0
C B:ILE222 3.9 27.4 1.0
CD2 A:LEU220 3.9 22.2 1.0
C B:PRO223 4.0 25.4 1.0
CG A:GLU227 4.1 25.2 1.0
CA B:PRO223 4.1 26.3 1.0
N B:VAL225 4.3 23.0 1.0
N B:PRO223 4.4 27.1 1.0
CA B:VAL225 4.4 23.3 1.0
CA B:LEU220 4.5 27.6 1.0
C A:VAL226 4.6 23.2 1.0
N B:ILE222 4.6 27.8 1.0
CB B:VAL225 4.6 23.6 1.0
C B:ALA221 4.7 27.8 1.0
OE1 A:GLU227 4.7 25.6 1.0
N B:GLY224 4.8 24.6 1.0
N B:ALA221 4.8 27.1 1.0
CA B:ILE222 4.9 27.6 1.0
O B:LEU219 4.9 27.2 1.0
N B:VAL226 4.9 23.2 1.0
O B:ALA221 5.0 28.6 1.0
CG A:LEU220 5.0 24.8 1.0

Reference:

T.E.Edwards, J.A.Abendroth, B.L.Staker, Seattle Structural Genomics Center For Infectious Disease. Crystal Structure of Ribose-5-Phosphate Isomerase A From Bartonella Henselae To Be Published.
Page generated: Mon Aug 12 08:26:02 2024

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