Potassium in PDB 3f7j: B.Subtilis Yvgn

The structure of B.Subtilis Yvgn, PDB code: 3f7j was solved by Y.F.Zhou, J.Lei, Y.H.Liang, X.-D.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.70
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	79.656, 123.075, 57.239, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 25.5

The binding sites of Potassium atom in the B.Subtilis Yvgn (pdb code 3f7j). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the B.Subtilis Yvgn, PDB code: 3f7j:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the B.Subtilis Yvgn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of B.Subtilis Yvgn within 5.0Å range: probe atom residue distance (Å) B Occ B:K281 b:10.5 occ:1.00 O3 A:NO3280 2.7 5.0 1.0 OD1 B:ASN82 3.0 4.2 1.0 O2 A:NO3280 3.3 2.4 1.0 N A:NO3280 3.4 2.6 1.0 O A:HOH660 3.6 11.3 1.0 CZ2 B:TRP81 3.6 3.0 1.0 CD1 A:LEU274 3.7 2.0 1.0 O B:HOH668 3.8 11.7 1.0 CH2 B:TRP81 3.8 2.6 1.0 CB B:ASN82 3.8 2.0 1.0 CG B:ASN82 3.8 2.0 1.0 K B:K282 3.9 17.1 1.0 CD1 B:PHE276 4.2 2.0 1.0 CD2 A:LEU274 4.4 2.0 1.0 CH2 A:TRP81 4.5 2.0 1.0 CG A:LEU274 4.5 2.0 1.0 CD2 B:LEU274 4.5 2.0 1.0 CE2 B:TRP81 4.5 2.0 1.0 CG B:PHE276 4.6 2.0 1.0 CB B:PHE276 4.6 2.0 1.0 CG B:LEU274 4.6 2.0 1.0 CD1 B:LEU274 4.7 2.0 1.0 CZ2 A:TRP81 4.7 3.3 1.0 O1 A:NO3280 4.8 3.9 1.0 CZ3 B:TRP81 4.8 3.9 1.0 CE1 B:PHE276 4.9 2.0 1.0 O B:HOH623 4.9 5.5 1.0

Potassium binding site 2 out of 2 in the B.Subtilis Yvgn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of B.Subtilis Yvgn within 5.0Å range: probe atom residue distance (Å) B Occ B:K282 b:17.1 occ:1.00 O B:HOH668 2.3 11.7 1.0 O A:HOH486 3.0 5.0 1.0 CB B:GLU83 3.7 2.2 1.0 CG A:PRO269 3.7 2.0 1.0 CA B:GLU83 3.8 2.0 1.0 N B:GLU83 3.8 2.0 1.0 K B:K281 3.9 10.5 1.0 O B:HOH623 3.9 5.5 1.0 CB B:PHE276 4.1 2.0 1.0 CB B:ASN82 4.2 2.0 1.0 CG B:GLU83 4.3 5.5 1.0 C B:ASN82 4.3 2.0 1.0 CD A:PRO269 4.3 2.0 1.0 CG B:PHE276 4.5 2.0 1.0 O B:HOH357 4.6 2.0 1.0 O B:ASN82 4.7 2.3 1.0 CD2 B:PHE276 4.8 2.0 1.0 O A:HOH545 4.8 8.5 1.0 NE1 B:TRP81 4.9 3.5 1.0 CA B:ASN82 4.9 2.0 1.0

J.Lei, Y.F.Zhou, L.F.Li, X.-D.Su. Structural and Biochemical Analyses of Yvgn and Ytbe From Bacillus Subtilis Protein Sci. V. 18 1792 2009.
ISSN: ISSN 0961-8368
PubMed: 19585557
DOI: 10.1002/PRO.178