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Potassium in PDB 3dcl: Crystal Structure of TM1086

Protein crystallography data

The structure of Crystal Structure of TM1086, PDB code: 3dcl was solved by M.Chruszcz, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.25
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 164.578, 164.578, 97.815, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 21.2

Other elements in 3dcl:

The structure of Crystal Structure of TM1086 also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of TM1086 (pdb code 3dcl). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Crystal Structure of TM1086, PDB code: 3dcl:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 3dcl

Go back to Potassium Binding Sites List in 3dcl
Potassium binding site 1 out of 5 in the Crystal Structure of TM1086


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of TM1086 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K289

b:53.5
occ:0.80
 O A:GLU62 2.8 39.2 1.0
O A:GLY42 2.8 38.0 1.0
O A:GLY64 2.8 38.8 1.0
OG A:SER66 2.8 37.7 1.0
OG1 A:THR44 2.9 36.5 1.0
O A:GLY41 2.9 39.1 1.0
C A:GLY42 3.6 37.6 1.0
N A:SER66 3.7 37.4 1.0
C A:GLU62 3.7 38.5 1.0
C A:GLY64 3.7 38.0 1.0
O A:HOH310 3.7 33.7 1.0
C A:GLY41 3.7 38.6 1.0
N A:THR44 3.7 36.1 1.0
CB A:THR44 3.8 35.6 1.0
CB A:GLU62 3.9 37.6 1.0
CB A:SER66 3.9 36.6 1.0
O A:PRO63 4.1 38.2 1.0
C A:VAL65 4.2 37.5 1.0
C A:PRO63 4.3 38.5 1.0
CA A:GLU62 4.3 38.2 1.0
N A:VAL65 4.3 37.8 1.0
CA A:VAL65 4.3 37.2 1.0
CA A:SER66 4.3 37.2 1.0
N A:GLY42 4.3 37.8 1.0
N A:ILE43 4.4 36.7 1.0
CA A:THR44 4.4 35.7 1.0
C A:ILE43 4.4 35.6 1.0
CA A:ILE43 4.4 35.9 1.0
CA A:GLY42 4.5 37.8 1.0
N A:GLY64 4.5 38.1 1.0
OE1 A:GLU62 4.6 42.5 1.0
CA A:GLY41 4.6 38.4 1.0
N A:PRO63 4.7 38.7 1.0
CA A:GLY64 4.7 38.0 1.0
N A:GLU62 4.7 38.2 1.0
N A:GLY41 4.7 38.4 1.0
CA A:PRO63 4.9 38.5 1.0

Potassium binding site 2 out of 5 in 3dcl

Go back to Potassium Binding Sites List in 3dcl
Potassium binding site 2 out of 5 in the Crystal Structure of TM1086


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of TM1086 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K289

b:42.3
occ:0.80
 OG B:SER66 2.7 38.1 1.0
O B:GLU62 2.7 39.4 1.0
O B:GLY42 2.8 38.2 1.0
O B:GLY41 2.8 39.4 1.0
O B:GLY64 2.8 38.6 1.0
OG1 B:THR44 2.8 38.4 1.0
C B:GLY42 3.6 37.5 1.0
O B:HOH294 3.6 30.4 1.0
N B:THR44 3.6 35.8 1.0
C B:GLY41 3.7 38.6 1.0
CB B:THR44 3.7 36.3 1.0
N B:SER66 3.7 37.3 1.0
C B:GLU62 3.7 38.1 1.0
C B:GLY64 3.7 37.9 1.0
CB B:GLU62 3.8 37.2 1.0
CB B:SER66 3.9 37.4 1.0
O B:PRO63 4.2 38.9 1.0
C B:VAL65 4.2 37.4 1.0
C B:PRO63 4.2 38.5 1.0
CA B:VAL65 4.3 37.2 1.0
CA B:THR44 4.3 35.8 1.0
N B:VAL65 4.3 38.0 1.0
N B:GLY42 4.3 37.8 1.0
CA B:GLU62 4.3 38.0 1.0
CA B:SER66 4.3 37.2 1.0
C B:ILE43 4.3 36.0 1.0
N B:ILE43 4.4 36.5 1.0
CA B:GLY42 4.4 37.9 1.0
CA B:ILE43 4.4 35.8 1.0
N B:GLY64 4.5 38.4 1.0
CA B:GLY41 4.6 38.6 1.0
N B:PRO63 4.6 38.5 1.0
CA B:GLY64 4.7 38.2 1.0
N B:GLY41 4.7 38.9 1.0
N B:GLU62 4.8 38.1 1.0
OE1 B:GLU62 4.8 40.3 1.0
CA B:PRO63 4.8 38.3 1.0
CG2 B:THR44 5.0 33.9 1.0

Potassium binding site 3 out of 5 in 3dcl

Go back to Potassium Binding Sites List in 3dcl
Potassium binding site 3 out of 5 in the Crystal Structure of TM1086


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of TM1086 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K288

b:40.8
occ:0.80
 OG C:SER66 2.7 38.6 1.0
O C:GLY42 2.7 38.1 1.0
OG1 C:THR44 2.8 37.6 1.0
O C:GLY64 2.8 38.7 1.0
O C:GLU62 2.8 39.0 1.0
O C:GLY41 2.8 39.5 1.0
C C:GLY42 3.5 37.5 1.0
C C:GLY41 3.6 38.5 1.0
N C:THR44 3.6 35.6 1.0
O C:HOH298 3.7 30.5 1.0
C C:GLY64 3.7 37.9 1.0
CB C:THR44 3.7 35.9 1.0
N C:SER66 3.7 37.7 1.0
C C:GLU62 3.8 38.5 1.0
CB C:SER66 3.9 38.0 1.0
CB C:GLU62 3.9 38.5 1.0
N C:GLY42 4.2 37.9 1.0
O C:PRO63 4.2 38.8 1.0
N C:ILE43 4.2 36.5 1.0
CA C:GLY42 4.3 37.8 1.0
CA C:THR44 4.3 35.7 1.0
C C:VAL65 4.3 37.5 1.0
C C:ILE43 4.3 35.7 1.0
N C:VAL65 4.3 37.9 1.0
CA C:VAL65 4.3 37.3 1.0
CA C:ILE43 4.3 35.8 1.0
C C:PRO63 4.3 38.5 1.0
CA C:GLU62 4.4 38.1 1.0
CA C:SER66 4.4 37.5 1.0
N C:GLY64 4.5 38.0 1.0
CA C:GLY41 4.5 38.7 1.0
N C:GLY41 4.7 38.6 1.0
OE1 C:GLU62 4.7 40.6 1.0
CA C:GLY64 4.7 38.2 1.0
N C:PRO63 4.7 38.8 1.0
N C:GLU62 4.8 38.4 1.0
CA C:PRO63 4.9 38.3 1.0

Potassium binding site 4 out of 5 in 3dcl

Go back to Potassium Binding Sites List in 3dcl
Potassium binding site 4 out of 5 in the Crystal Structure of TM1086


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of TM1086 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K288

b:39.9
occ:0.80
 O D:GLY64 2.7 38.8 1.0
O D:GLY42 2.8 37.8 1.0
O D:GLU62 2.8 39.0 1.0
OG D:SER66 2.8 39.1 1.0
OG1 D:THR44 2.8 37.4 1.0
O D:GLY41 2.8 39.0 1.0
C D:GLY42 3.5 37.2 1.0
N D:THR44 3.6 36.1 1.0
CB D:THR44 3.6 36.1 1.0
C D:GLY41 3.6 38.5 1.0
C D:GLY64 3.7 38.0 1.0
N D:SER66 3.7 37.4 1.0
O D:HOH291 3.7 30.4 1.0
C D:GLU62 3.7 38.4 1.0
CB D:SER66 3.9 37.5 1.0
CB D:GLU62 4.0 38.1 1.0
O D:PRO63 4.1 38.3 1.0
C D:VAL65 4.2 37.3 1.0
N D:GLY42 4.2 37.4 1.0
C D:PRO63 4.2 38.4 1.0
CA D:VAL65 4.2 37.3 1.0
CA D:THR44 4.3 35.8 1.0
N D:ILE43 4.3 36.6 1.0
N D:VAL65 4.3 37.9 1.0
CA D:GLY42 4.3 37.6 1.0
C D:ILE43 4.3 35.6 1.0
CA D:ILE43 4.3 35.5 1.0
CA D:SER66 4.3 37.5 1.0
CA D:GLU62 4.4 38.2 1.0
N D:GLY64 4.4 38.2 1.0
CA D:GLY41 4.7 38.7 1.0
CA D:GLY64 4.7 38.1 1.0
N D:PRO63 4.7 38.2 1.0
OE1 D:GLU62 4.7 43.0 1.0
N D:GLY41 4.8 38.9 1.0
N D:GLU62 4.8 38.2 1.0
CA D:PRO63 4.9 38.2 1.0
CG2 D:THR44 4.9 34.0 1.0

Potassium binding site 5 out of 5 in 3dcl

Go back to Potassium Binding Sites List in 3dcl
Potassium binding site 5 out of 5 in the Crystal Structure of TM1086


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of TM1086 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K287

b:40.5
occ:0.80
 O E:GLY42 2.7 38.4 1.0
OG1 E:THR44 2.7 37.1 1.0
O E:GLY64 2.8 38.8 1.0
O E:GLU62 2.8 39.0 1.0
OG E:SER66 2.8 38.0 1.0
O E:GLY41 2.8 38.9 1.0
C E:GLY42 3.5 37.6 1.0
N E:THR44 3.6 35.8 1.0
C E:GLY41 3.6 38.4 1.0
O E:HOH290 3.7 32.0 1.0
C E:GLY64 3.7 37.9 1.0
N E:SER66 3.7 37.5 1.0
CB E:THR44 3.7 35.9 1.0
C E:GLU62 3.7 38.5 1.0
CB E:SER66 3.8 37.6 1.0
CB E:GLU62 3.9 38.2 1.0
O E:PRO63 4.1 38.8 1.0
N E:GLY42 4.2 37.8 1.0
C E:VAL65 4.2 37.3 1.0
C E:PRO63 4.3 38.5 1.0
CA E:THR44 4.3 35.7 1.0
N E:VAL65 4.3 37.6 1.0
C E:ILE43 4.3 35.7 1.0
N E:ILE43 4.3 36.8 1.0
CA E:VAL65 4.3 37.2 1.0
CA E:GLY42 4.3 37.6 1.0
CA E:GLU62 4.3 37.9 1.0
CA E:SER66 4.3 37.3 1.0
CA E:ILE43 4.4 35.6 1.0
N E:GLY64 4.5 38.0 1.0
CA E:GLY41 4.6 38.4 1.0
OE1 E:GLU62 4.7 39.8 1.0
CA E:GLY64 4.7 37.9 1.0
N E:GLY41 4.7 38.5 1.0
N E:PRO63 4.7 38.7 1.0
N E:GLU62 4.8 38.5 1.0
CA E:PRO63 4.9 38.4 1.0

Reference:

M.Chruszcz, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, W.Minor. Crystal Structure of TM1086 To Be Published.
Page generated: Mon Aug 12 08:00:57 2024

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