Potassium in PDB 2yia: Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
Enzymatic activity of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
All present enzymatic activity of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus:
2.7.7.48;
2.7.7.49;
Protein crystallography data
The structure of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus, PDB code: 2yia
was solved by
S.C.Graham,
L.P.Sarin,
M.W.Bahar,
R.A.Myers,
D.I.Stuart,
D.H.Bamford,
J.M.Grimes,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
145.01 /
3.02
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
200.938,
209.467,
243.393,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
18.7 /
21.6
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
(pdb code 2yia). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the
Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus, PDB code: 2yia:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Potassium binding site 1 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 1 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1002
b:72.0
occ:1.00
|
OD1
|
A:ASN184
|
2.5
|
59.8
|
1.0
|
|
O
|
A:GLY512
|
2.6
|
53.7
|
1.0
|
|
O
|
A:ASN182
|
2.7
|
50.3
|
1.0
|
|
OD1
|
A:ASN514
|
2.7
|
54.0
|
1.0
|
|
OD1
|
A:ASN409
|
2.7
|
47.4
|
1.0
|
|
O
|
A:VAL177
|
2.8
|
44.4
|
1.0
|
|
C
|
A:GLY512
|
3.6
|
51.8
|
1.0
|
|
CG
|
A:ASN514
|
3.7
|
47.8
|
1.0
|
|
CG
|
A:ASN184
|
3.7
|
57.2
|
1.0
|
|
CG
|
A:ASN409
|
3.8
|
51.6
|
1.0
|
|
C
|
A:VAL177
|
3.8
|
44.1
|
1.0
|
|
N
|
A:ASN184
|
3.8
|
39.2
|
1.0
|
|
C
|
A:ASN182
|
3.9
|
48.1
|
1.0
|
|
N
|
A:ASN514
|
4.0
|
36.9
|
1.0
|
|
CA
|
A:ASN184
|
4.0
|
38.0
|
1.0
|
|
C
|
A:PRO183
|
4.0
|
44.5
|
1.0
|
|
ND2
|
A:ASN182
|
4.1
|
47.4
|
1.0
|
|
CA
|
A:ILE513
|
4.2
|
37.9
|
1.0
|
|
CB
|
A:ASN409
|
4.2
|
28.8
|
1.0
|
|
N
|
A:ILE513
|
4.3
|
41.6
|
1.0
|
|
CG1
|
A:VAL177
|
4.3
|
37.4
|
1.0
|
|
CA
|
A:ASN409
|
4.3
|
33.5
|
1.0
|
|
O
|
A:PRO183
|
4.4
|
45.7
|
1.0
|
|
CB
|
A:ASN184
|
4.4
|
33.8
|
1.0
|
|
CA
|
A:ALA178
|
4.5
|
39.1
|
1.0
|
|
ND2
|
A:ASN514
|
4.5
|
35.1
|
1.0
|
|
N
|
A:ALA178
|
4.5
|
39.6
|
1.0
|
|
C
|
A:ILE513
|
4.5
|
42.8
|
1.0
|
|
CB
|
A:ASN514
|
4.5
|
31.7
|
1.0
|
|
CA
|
A:PRO183
|
4.6
|
38.9
|
1.0
|
|
CG
|
A:ASN182
|
4.6
|
58.4
|
1.0
|
|
CA
|
A:GLY512
|
4.6
|
50.1
|
1.0
|
|
CB
|
A:ASN182
|
4.6
|
40.3
|
1.0
|
|
O
|
A:ALA178
|
4.7
|
45.6
|
1.0
|
|
ND2
|
A:ASN184
|
4.7
|
44.4
|
1.0
|
|
N
|
A:PRO183
|
4.7
|
40.1
|
1.0
|
|
C
|
A:ALA178
|
4.8
|
44.9
|
1.0
|
|
CA
|
A:VAL177
|
4.8
|
38.0
|
1.0
|
|
CA
|
A:ASN514
|
4.8
|
35.7
|
1.0
|
|
ND2
|
A:ASN409
|
4.9
|
42.0
|
1.0
|
|
CA
|
A:ASN182
|
4.9
|
45.3
|
1.0
|
|
Potassium binding site 2 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 2 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K1002
b:74.6
occ:1.00
|
OD1
|
B:ASN184
|
2.5
|
60.5
|
1.0
|
|
O
|
B:GLY512
|
2.6
|
51.0
|
1.0
|
|
O
|
B:ASN182
|
2.7
|
55.6
|
1.0
|
|
OD1
|
B:ASN514
|
2.7
|
58.2
|
1.0
|
|
OD1
|
B:ASN409
|
2.7
|
38.4
|
1.0
|
|
O
|
B:VAL177
|
2.8
|
54.0
|
1.0
|
|
C
|
B:GLY512
|
3.6
|
50.9
|
1.0
|
|
CG
|
B:ASN184
|
3.7
|
60.3
|
1.0
|
|
CG
|
B:ASN514
|
3.7
|
54.9
|
1.0
|
|
CG
|
B:ASN409
|
3.8
|
46.7
|
1.0
|
|
C
|
B:VAL177
|
3.8
|
51.4
|
1.0
|
|
N
|
B:ASN184
|
3.8
|
46.3
|
1.0
|
|
C
|
B:ASN182
|
3.9
|
53.3
|
1.0
|
|
N
|
B:ASN514
|
4.0
|
41.3
|
1.0
|
|
CA
|
B:ASN184
|
4.0
|
46.5
|
1.0
|
|
C
|
B:PRO183
|
4.1
|
50.1
|
1.0
|
|
ND2
|
B:ASN182
|
4.1
|
56.1
|
1.0
|
|
CB
|
B:ASN409
|
4.2
|
25.9
|
1.0
|
|
CA
|
B:ILE513
|
4.2
|
43.0
|
1.0
|
|
N
|
B:ILE513
|
4.2
|
46.4
|
1.0
|
|
CA
|
B:ASN409
|
4.2
|
33.4
|
1.0
|
|
CG1
|
B:VAL177
|
4.3
|
49.2
|
1.0
|
|
CB
|
B:ASN184
|
4.4
|
45.6
|
1.0
|
|
O
|
B:PRO183
|
4.4
|
50.1
|
1.0
|
|
CA
|
B:ALA178
|
4.4
|
43.6
|
1.0
|
|
N
|
B:ALA178
|
4.5
|
44.1
|
1.0
|
|
ND2
|
B:ASN514
|
4.5
|
41.3
|
1.0
|
|
C
|
B:ILE513
|
4.5
|
46.6
|
1.0
|
|
CB
|
B:ASN514
|
4.6
|
36.5
|
1.0
|
|
CA
|
B:PRO183
|
4.6
|
46.1
|
1.0
|
|
CG
|
B:ASN182
|
4.6
|
69.1
|
1.0
|
|
CA
|
B:GLY512
|
4.6
|
46.8
|
1.0
|
|
CB
|
B:ASN182
|
4.7
|
44.6
|
1.0
|
|
O
|
B:ALA178
|
4.7
|
48.9
|
1.0
|
|
N
|
B:PRO183
|
4.7
|
47.2
|
1.0
|
|
ND2
|
B:ASN184
|
4.7
|
41.1
|
1.0
|
|
C
|
B:ALA178
|
4.8
|
47.5
|
1.0
|
|
CA
|
B:VAL177
|
4.8
|
48.9
|
1.0
|
|
ND2
|
B:ASN409
|
4.9
|
44.0
|
1.0
|
|
CA
|
B:ASN182
|
4.9
|
47.3
|
1.0
|
|
CA
|
B:ASN514
|
4.9
|
40.1
|
1.0
|
|
Potassium binding site 3 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 3 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K1002
b:0.8
occ:1.00
|
OD1
|
C:ASN184
|
2.5
|
83.0
|
1.0
|
|
O
|
C:GLY512
|
2.6
|
88.9
|
1.0
|
|
O
|
C:ASN182
|
2.6
|
88.8
|
1.0
|
|
OD1
|
C:ASN514
|
2.7
|
80.5
|
1.0
|
|
OD1
|
C:ASN409
|
2.8
|
79.5
|
1.0
|
|
O
|
C:VAL177
|
2.8
|
76.4
|
1.0
|
|
C
|
C:GLY512
|
3.6
|
88.4
|
1.0
|
|
CG
|
C:ASN184
|
3.7
|
88.2
|
1.0
|
|
CG
|
C:ASN514
|
3.7
|
95.5
|
1.0
|
|
N
|
C:ASN184
|
3.8
|
89.8
|
1.0
|
|
C
|
C:VAL177
|
3.8
|
75.1
|
1.0
|
|
CG
|
C:ASN409
|
3.8
|
85.0
|
1.0
|
|
C
|
C:ASN182
|
3.9
|
89.0
|
1.0
|
|
CA
|
C:ASN184
|
4.0
|
89.8
|
1.0
|
|
C
|
C:PRO183
|
4.0
|
91.8
|
1.0
|
|
N
|
C:ASN514
|
4.0
|
84.0
|
1.0
|
|
ND2
|
C:ASN182
|
4.1
|
86.7
|
1.0
|
|
CA
|
C:ILE513
|
4.2
|
79.7
|
1.0
|
|
CB
|
C:ASN409
|
4.2
|
66.8
|
1.0
|
|
N
|
C:ILE513
|
4.2
|
81.5
|
1.0
|
|
CA
|
C:ASN409
|
4.3
|
71.7
|
1.0
|
|
CG1
|
C:VAL177
|
4.3
|
72.9
|
1.0
|
|
O
|
C:PRO183
|
4.3
|
92.7
|
1.0
|
|
CB
|
C:ASN184
|
4.4
|
86.4
|
1.0
|
|
CA
|
C:ALA178
|
4.4
|
71.3
|
1.0
|
|
N
|
C:ALA178
|
4.4
|
70.9
|
1.0
|
|
ND2
|
C:ASN514
|
4.5
|
93.5
|
1.0
|
|
CA
|
C:PRO183
|
4.5
|
84.6
|
1.0
|
|
C
|
C:ILE513
|
4.5
|
86.8
|
1.0
|
|
CB
|
C:ASN514
|
4.6
|
78.7
|
1.0
|
|
CG
|
C:ASN182
|
4.6
|
0.9
|
1.0
|
|
CA
|
C:GLY512
|
4.6
|
87.8
|
1.0
|
|
N
|
C:PRO183
|
4.7
|
85.5
|
1.0
|
|
CB
|
C:ASN182
|
4.7
|
87.2
|
1.0
|
|
ND2
|
C:ASN184
|
4.7
|
65.8
|
1.0
|
|
O
|
C:ALA178
|
4.7
|
72.0
|
1.0
|
|
C
|
C:ALA178
|
4.8
|
74.3
|
1.0
|
|
CA
|
C:VAL177
|
4.8
|
70.8
|
1.0
|
|
CA
|
C:ASN182
|
4.9
|
85.7
|
1.0
|
|
ND2
|
C:ASN409
|
4.9
|
82.4
|
1.0
|
|
CA
|
C:ASN514
|
4.9
|
82.9
|
1.0
|
|
Potassium binding site 4 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 4 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K1002
b:67.8
occ:1.00
|
OD1
|
D:ASN184
|
2.5
|
43.7
|
1.0
|
|
O
|
D:GLY512
|
2.6
|
44.9
|
1.0
|
|
O
|
D:ASN182
|
2.6
|
44.2
|
1.0
|
|
OD1
|
D:ASN514
|
2.7
|
46.7
|
1.0
|
|
OD1
|
D:ASN409
|
2.7
|
33.2
|
1.0
|
|
O
|
D:VAL177
|
2.8
|
49.4
|
1.0
|
|
C
|
D:GLY512
|
3.6
|
43.0
|
1.0
|
|
CG
|
D:ASN184
|
3.7
|
47.7
|
1.0
|
|
CG
|
D:ASN514
|
3.7
|
49.3
|
1.0
|
|
C
|
D:VAL177
|
3.7
|
49.2
|
1.0
|
|
CG
|
D:ASN409
|
3.8
|
37.0
|
1.0
|
|
N
|
D:ASN184
|
3.8
|
40.1
|
1.0
|
|
C
|
D:ASN182
|
3.9
|
45.0
|
1.0
|
|
N
|
D:ASN514
|
4.0
|
37.1
|
1.0
|
|
CA
|
D:ASN184
|
4.0
|
39.8
|
1.0
|
|
C
|
D:PRO183
|
4.0
|
41.1
|
1.0
|
|
ND2
|
D:ASN182
|
4.1
|
39.4
|
1.0
|
|
CA
|
D:ILE513
|
4.2
|
32.6
|
1.0
|
|
CB
|
D:ASN409
|
4.2
|
25.7
|
1.0
|
|
N
|
D:ILE513
|
4.2
|
36.2
|
1.0
|
|
CA
|
D:ASN409
|
4.3
|
32.1
|
1.0
|
|
CG1
|
D:VAL177
|
4.3
|
51.5
|
1.0
|
|
O
|
D:PRO183
|
4.4
|
40.1
|
1.0
|
|
CB
|
D:ASN184
|
4.4
|
36.7
|
1.0
|
|
N
|
D:ALA178
|
4.5
|
41.7
|
1.0
|
|
CA
|
D:ALA178
|
4.5
|
40.0
|
1.0
|
|
ND2
|
D:ASN514
|
4.5
|
44.9
|
1.0
|
|
C
|
D:ILE513
|
4.5
|
38.1
|
1.0
|
|
CA
|
D:PRO183
|
4.5
|
35.9
|
1.0
|
|
CB
|
D:ASN514
|
4.6
|
34.6
|
1.0
|
|
CG
|
D:ASN182
|
4.6
|
55.7
|
1.0
|
|
CA
|
D:GLY512
|
4.6
|
37.7
|
1.0
|
|
CB
|
D:ASN182
|
4.7
|
46.3
|
1.0
|
|
N
|
D:PRO183
|
4.7
|
38.8
|
1.0
|
|
O
|
D:ALA178
|
4.7
|
43.0
|
1.0
|
|
ND2
|
D:ASN184
|
4.8
|
37.0
|
1.0
|
|
CA
|
D:VAL177
|
4.8
|
49.3
|
1.0
|
|
C
|
D:ALA178
|
4.8
|
42.8
|
1.0
|
|
CA
|
D:ASN182
|
4.9
|
44.9
|
1.0
|
|
ND2
|
D:ASN409
|
4.9
|
22.8
|
1.0
|
|
CA
|
D:ASN514
|
4.9
|
38.1
|
1.0
|
|
Potassium binding site 5 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 5 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K1002
b:85.7
occ:1.00
|
OD1
|
E:ASN184
|
2.5
|
64.2
|
1.0
|
|
O
|
E:ASN182
|
2.6
|
51.3
|
1.0
|
|
O
|
E:GLY512
|
2.6
|
55.9
|
1.0
|
|
OD1
|
E:ASN514
|
2.7
|
69.9
|
1.0
|
|
OD1
|
E:ASN409
|
2.7
|
49.6
|
1.0
|
|
O
|
E:VAL177
|
2.8
|
55.9
|
1.0
|
|
C
|
E:GLY512
|
3.6
|
54.1
|
1.0
|
|
CG
|
E:ASN514
|
3.7
|
67.0
|
1.0
|
|
CG
|
E:ASN184
|
3.7
|
61.8
|
1.0
|
|
C
|
E:VAL177
|
3.7
|
54.1
|
1.0
|
|
CG
|
E:ASN409
|
3.8
|
51.0
|
1.0
|
|
N
|
E:ASN184
|
3.8
|
49.0
|
1.0
|
|
C
|
E:ASN182
|
3.8
|
51.2
|
1.0
|
|
N
|
E:ASN514
|
4.0
|
48.0
|
1.0
|
|
C
|
E:PRO183
|
4.0
|
51.4
|
1.0
|
|
CA
|
E:ASN184
|
4.0
|
48.4
|
1.0
|
|
ND2
|
E:ASN182
|
4.2
|
54.8
|
1.0
|
|
CA
|
E:ILE513
|
4.2
|
44.5
|
1.0
|
|
CB
|
E:ASN409
|
4.2
|
35.5
|
1.0
|
|
CG1
|
E:VAL177
|
4.2
|
50.6
|
1.0
|
|
N
|
E:ILE513
|
4.2
|
47.0
|
1.0
|
|
CA
|
E:ASN409
|
4.3
|
44.0
|
1.0
|
|
O
|
E:PRO183
|
4.4
|
52.8
|
1.0
|
|
CA
|
E:ALA178
|
4.4
|
45.1
|
1.0
|
|
N
|
E:ALA178
|
4.5
|
46.2
|
1.0
|
|
CB
|
E:ASN184
|
4.5
|
41.9
|
1.0
|
|
ND2
|
E:ASN514
|
4.5
|
60.3
|
1.0
|
|
C
|
E:ILE513
|
4.5
|
51.9
|
1.0
|
|
CA
|
E:PRO183
|
4.5
|
43.6
|
1.0
|
|
CB
|
E:ASN514
|
4.5
|
38.6
|
1.0
|
|
CG
|
E:ASN182
|
4.6
|
65.6
|
1.0
|
|
CA
|
E:GLY512
|
4.6
|
48.7
|
1.0
|
|
CB
|
E:ASN182
|
4.7
|
49.6
|
1.0
|
|
N
|
E:PRO183
|
4.7
|
44.0
|
1.0
|
|
O
|
E:ALA178
|
4.7
|
52.9
|
1.0
|
|
ND2
|
E:ASN184
|
4.7
|
44.0
|
1.0
|
|
CA
|
E:VAL177
|
4.8
|
51.4
|
1.0
|
|
C
|
E:ALA178
|
4.8
|
51.8
|
1.0
|
|
CA
|
E:ASN182
|
4.8
|
51.0
|
1.0
|
|
CA
|
E:ASN514
|
4.8
|
46.7
|
1.0
|
|
ND2
|
E:ASN409
|
4.9
|
48.7
|
1.0
|
|
Potassium binding site 6 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 6 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K1002
b:71.2
occ:1.00
|
OD1
|
F:ASN184
|
2.5
|
50.4
|
1.0
|
|
O
|
F:ASN182
|
2.6
|
46.1
|
1.0
|
|
O
|
F:GLY512
|
2.6
|
49.6
|
1.0
|
|
OD1
|
F:ASN514
|
2.7
|
59.5
|
1.0
|
|
OD1
|
F:ASN409
|
2.8
|
40.6
|
1.0
|
|
O
|
F:VAL177
|
2.8
|
53.3
|
1.0
|
|
C
|
F:GLY512
|
3.6
|
48.6
|
1.0
|
|
CG
|
F:ASN514
|
3.7
|
59.8
|
1.0
|
|
CG
|
F:ASN184
|
3.7
|
57.3
|
1.0
|
|
CG
|
F:ASN409
|
3.8
|
53.0
|
1.0
|
|
C
|
F:VAL177
|
3.8
|
50.2
|
1.0
|
|
N
|
F:ASN184
|
3.8
|
46.3
|
1.0
|
|
C
|
F:ASN182
|
3.8
|
46.9
|
1.0
|
|
N
|
F:ASN514
|
4.0
|
43.4
|
1.0
|
|
CA
|
F:ASN184
|
4.0
|
47.8
|
1.0
|
|
C
|
F:PRO183
|
4.0
|
46.8
|
1.0
|
|
ND2
|
F:ASN182
|
4.2
|
54.9
|
1.0
|
|
CA
|
F:ILE513
|
4.2
|
39.8
|
1.0
|
|
CB
|
F:ASN409
|
4.2
|
39.5
|
1.0
|
|
CA
|
F:ASN409
|
4.3
|
42.2
|
1.0
|
|
N
|
F:ILE513
|
4.3
|
41.5
|
1.0
|
|
CG1
|
F:VAL177
|
4.3
|
43.3
|
1.0
|
|
O
|
F:PRO183
|
4.4
|
47.5
|
1.0
|
|
ND2
|
F:ASN514
|
4.5
|
43.1
|
1.0
|
|
CB
|
F:ASN184
|
4.5
|
47.6
|
1.0
|
|
CA
|
F:ALA178
|
4.5
|
44.5
|
1.0
|
|
N
|
F:ALA178
|
4.5
|
45.0
|
1.0
|
|
C
|
F:ILE513
|
4.5
|
43.3
|
1.0
|
|
CA
|
F:PRO183
|
4.5
|
40.0
|
1.0
|
|
CB
|
F:ASN514
|
4.5
|
42.4
|
1.0
|
|
CG
|
F:ASN182
|
4.6
|
59.7
|
1.0
|
|
CA
|
F:GLY512
|
4.6
|
47.6
|
1.0
|
|
CB
|
F:ASN182
|
4.7
|
47.6
|
1.0
|
|
N
|
F:PRO183
|
4.7
|
41.0
|
1.0
|
|
ND2
|
F:ASN184
|
4.7
|
43.6
|
1.0
|
|
O
|
F:ALA178
|
4.8
|
46.1
|
1.0
|
|
CA
|
F:VAL177
|
4.8
|
42.5
|
1.0
|
|
C
|
F:ALA178
|
4.8
|
47.7
|
1.0
|
|
CA
|
F:ASN182
|
4.8
|
47.4
|
1.0
|
|
CA
|
F:ASN514
|
4.9
|
45.0
|
1.0
|
|
ND2
|
F:ASN409
|
4.9
|
43.0
|
1.0
|
|
Potassium binding site 7 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 7 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K1002
b:80.5
occ:1.00
|
OD1
|
G:ASN184
|
2.5
|
69.0
|
1.0
|
|
O
|
G:GLY512
|
2.6
|
58.0
|
1.0
|
|
O
|
G:ASN182
|
2.6
|
59.1
|
1.0
|
|
OD1
|
G:ASN514
|
2.7
|
71.7
|
1.0
|
|
OD1
|
G:ASN409
|
2.8
|
61.0
|
1.0
|
|
O
|
G:VAL177
|
2.8
|
62.1
|
1.0
|
|
C
|
G:GLY512
|
3.6
|
58.4
|
1.0
|
|
CG
|
G:ASN184
|
3.7
|
64.4
|
1.0
|
|
CG
|
G:ASN514
|
3.7
|
70.1
|
1.0
|
|
N
|
G:ASN184
|
3.8
|
54.8
|
1.0
|
|
CG
|
G:ASN409
|
3.8
|
62.1
|
1.0
|
|
C
|
G:VAL177
|
3.8
|
59.8
|
1.0
|
|
C
|
G:ASN182
|
3.9
|
58.1
|
1.0
|
|
N
|
G:ASN514
|
4.0
|
54.5
|
1.0
|
|
C
|
G:PRO183
|
4.0
|
58.6
|
1.0
|
|
CA
|
G:ASN184
|
4.0
|
54.1
|
1.0
|
|
ND2
|
G:ASN182
|
4.1
|
40.0
|
1.0
|
|
CA
|
G:ILE513
|
4.2
|
53.5
|
1.0
|
|
N
|
G:ILE513
|
4.2
|
54.7
|
1.0
|
|
CB
|
G:ASN409
|
4.2
|
45.5
|
1.0
|
|
CA
|
G:ASN409
|
4.3
|
47.8
|
1.0
|
|
CG1
|
G:VAL177
|
4.3
|
52.6
|
1.0
|
|
O
|
G:PRO183
|
4.4
|
59.6
|
1.0
|
|
CB
|
G:ASN184
|
4.4
|
52.4
|
1.0
|
|
CA
|
G:ALA178
|
4.5
|
51.8
|
1.0
|
|
ND2
|
G:ASN514
|
4.5
|
59.8
|
1.0
|
|
N
|
G:ALA178
|
4.5
|
52.6
|
1.0
|
|
C
|
G:ILE513
|
4.5
|
58.7
|
1.0
|
|
CA
|
G:PRO183
|
4.5
|
54.3
|
1.0
|
|
CB
|
G:ASN514
|
4.6
|
52.3
|
1.0
|
|
CG
|
G:ASN182
|
4.6
|
56.8
|
1.0
|
|
CA
|
G:GLY512
|
4.6
|
55.1
|
1.0
|
|
CB
|
G:ASN182
|
4.7
|
47.6
|
1.0
|
|
N
|
G:PRO183
|
4.7
|
54.7
|
1.0
|
|
ND2
|
G:ASN184
|
4.7
|
44.7
|
1.0
|
|
O
|
G:ALA178
|
4.7
|
53.3
|
1.0
|
|
C
|
G:ALA178
|
4.8
|
55.3
|
1.0
|
|
CA
|
G:VAL177
|
4.8
|
54.3
|
1.0
|
|
CA
|
G:ASN182
|
4.9
|
52.7
|
1.0
|
|
CA
|
G:ASN514
|
4.9
|
53.5
|
1.0
|
|
ND2
|
G:ASN409
|
4.9
|
49.5
|
1.0
|
|
Potassium binding site 8 out
of 8 in 2yia
Go back to
Potassium Binding Sites List in 2yia
Potassium binding site 8 out
of 8 in the Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Structure of the Rna Polymerase VP1 From Infectious Pancreatic Necrosis Virus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:K1002
b:0.8
occ:1.00
|
OD1
|
H:ASN184
|
2.5
|
70.3
|
1.0
|
|
O
|
H:ASN182
|
2.6
|
69.1
|
1.0
|
|
O
|
H:GLY512
|
2.6
|
68.9
|
1.0
|
|
OD1
|
H:ASN514
|
2.7
|
77.4
|
1.0
|
|
OD1
|
H:ASN409
|
2.8
|
68.1
|
1.0
|
|
O
|
H:VAL177
|
2.8
|
67.8
|
1.0
|
|
C
|
H:GLY512
|
3.6
|
67.6
|
1.0
|
|
CG
|
H:ASN184
|
3.7
|
73.9
|
1.0
|
|
CG
|
H:ASN514
|
3.7
|
81.1
|
1.0
|
|
C
|
H:VAL177
|
3.7
|
66.8
|
1.0
|
|
CG
|
H:ASN409
|
3.8
|
68.2
|
1.0
|
|
N
|
H:ASN184
|
3.8
|
67.2
|
1.0
|
|
C
|
H:ASN182
|
3.9
|
72.5
|
1.0
|
|
N
|
H:ASN514
|
4.0
|
62.8
|
1.0
|
|
CA
|
H:ASN184
|
4.0
|
66.4
|
1.0
|
|
C
|
H:PRO183
|
4.0
|
71.2
|
1.0
|
|
ND2
|
H:ASN182
|
4.1
|
65.1
|
1.0
|
|
CB
|
H:ASN409
|
4.2
|
52.0
|
1.0
|
|
CA
|
H:ILE513
|
4.2
|
58.1
|
1.0
|
|
CA
|
H:ASN409
|
4.2
|
58.4
|
1.0
|
|
N
|
H:ILE513
|
4.3
|
60.6
|
1.0
|
|
CG1
|
H:VAL177
|
4.3
|
65.4
|
1.0
|
|
O
|
H:PRO183
|
4.4
|
70.4
|
1.0
|
|
CA
|
H:ALA178
|
4.4
|
60.2
|
1.0
|
|
N
|
H:ALA178
|
4.4
|
61.5
|
1.0
|
|
CB
|
H:ASN184
|
4.4
|
63.7
|
1.0
|
|
ND2
|
H:ASN514
|
4.5
|
75.1
|
1.0
|
|
CA
|
H:PRO183
|
4.5
|
68.3
|
1.0
|
|
C
|
H:ILE513
|
4.5
|
65.1
|
1.0
|
|
CB
|
H:ASN514
|
4.6
|
61.3
|
1.0
|
|
CG
|
H:ASN182
|
4.6
|
81.5
|
1.0
|
|
CA
|
H:GLY512
|
4.6
|
64.7
|
1.0
|
|
N
|
H:PRO183
|
4.7
|
69.8
|
1.0
|
|
CB
|
H:ASN182
|
4.7
|
68.8
|
1.0
|
|
O
|
H:ALA178
|
4.7
|
66.9
|
1.0
|
|
ND2
|
H:ASN184
|
4.7
|
60.6
|
1.0
|
|
C
|
H:ALA178
|
4.8
|
67.5
|
1.0
|
|
CA
|
H:VAL177
|
4.8
|
64.6
|
1.0
|
|
ND2
|
H:ASN409
|
4.9
|
60.7
|
1.0
|
|
CA
|
H:ASN182
|
4.9
|
70.3
|
1.0
|
|
CA
|
H:ASN514
|
4.9
|
62.1
|
1.0
|
|
Reference:
S.C.Graham,
L.P.Sarin,
M.W.Bahar,
R.A.Myers,
D.I.Stuart,
D.H.Bamford,
J.M.Grimes.
The N-Terminus of the Rna Polymerase From Infectious Pancreatic Necrosis Virus Is the Determinant of Genome Attachment. Plos Pathog. V. 7 2085 2011.
ISSN: ISSN 1553-7366
PubMed: 21731487
DOI: 10.1371/JOURNAL.PPAT.1002085
Page generated: Mon Aug 12 07:43:45 2024
|
