Potassium in PDB 2pa2: Crystal Structure of Human Ribosomal Protein L10 Core Domain

The structure of Crystal Structure of Human Ribosomal Protein L10 Core Domain, PDB code: 2pa2 was solved by M.Nishimura, T.Kaminishi, C.Takemoto, M.Kawazoe, T.Yoshida, A.Tanaka, S.Sugano, M.Shirouzu, T.Ohkubo, S.Yokoyama, Y.Kobayashi, Riken Structuralgenomics/Proteomics Initiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.66 / 2.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	52.724, 52.724, 185.489, 90.00, 90.00, 120.00
R / Rfree (%)	24 / 26.4

The binding sites of Potassium atom in the Crystal Structure of Human Ribosomal Protein L10 Core Domain (pdb code 2pa2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Human Ribosomal Protein L10 Core Domain, PDB code: 2pa2:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Crystal Structure of Human Ribosomal Protein L10 Core Domain


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Human Ribosomal Protein L10 Core Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:K1 b:72.0 occ:1.00 O A:PHE159 2.4 69.2 1.0 OE1 A:GLN163 2.5 68.3 1.0 O A:HOH199 2.7 51.0 1.0 O A:LYS156 2.8 64.0 1.0 O A:GLY161 2.9 72.1 1.0 C A:PHE159 3.6 69.3 1.0 CD A:GLN163 3.7 65.5 1.0 O A:HOH197 3.9 58.8 1.0 O A:PRO160 3.9 70.4 1.0 C A:LYS156 3.9 61.3 1.0 C A:GLY161 4.1 71.2 1.0 C A:PRO160 4.1 69.6 1.0 NE2 A:GLN163 4.3 67.4 1.0 CA A:PRO160 4.4 69.7 1.0 N A:PRO160 4.5 70.1 1.0 CA A:PHE159 4.5 68.0 1.0 CB A:LYS156 4.6 56.3 1.0 CB A:PHE159 4.6 65.3 1.0 N A:GLY161 4.6 69.7 1.0 CG A:LYS156 4.7 59.4 1.0 N A:PHE159 4.7 68.6 1.0 CA A:LYS156 4.7 57.6 1.0 CA A:PHE157 4.8 64.1 1.0 CG A:GLN163 4.8 64.1 1.0 CA A:ARG162 4.8 72.7 1.0 CD A:LYS156 4.8 60.6 1.0 N A:GLN163 4.8 69.3 1.0 N A:PHE157 4.8 63.9 1.0 N A:ARG162 4.9 71.7 1.0 CB A:GLN163 5.0 64.7 1.0 CA A:GLY161 5.0 70.6 1.0

Potassium binding site 2 out of 2 in the Crystal Structure of Human Ribosomal Protein L10 Core Domain


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Human Ribosomal Protein L10 Core Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:K2 b:76.5 occ:1.00 O B:PHE159 2.4 68.2 1.0 OE1 B:GLN163 2.7 68.8 1.0 O B:LYS156 2.8 62.9 1.0 O B:GLY161 2.9 73.0 1.0 C B:PHE159 3.6 68.0 1.0 CD B:GLN163 3.9 67.7 1.0 C B:LYS156 4.0 61.2 1.0 C B:GLY161 4.1 71.6 1.0 C B:PRO160 4.1 68.7 1.0 O B:PRO160 4.2 69.4 1.0 CA B:PRO160 4.3 68.9 1.0 N B:PRO160 4.4 68.8 1.0 N B:GLY161 4.5 68.8 1.0 NE2 B:GLN163 4.5 69.7 1.0 CA B:PHE159 4.6 67.0 1.0 CB B:PHE159 4.7 64.9 1.0 CA B:PHE157 4.7 63.4 1.0 N B:PHE159 4.7 67.6 1.0 CB B:LYS156 4.8 56.8 1.0 N B:PHE157 4.8 63.7 1.0 CA B:ARG162 4.8 73.2 1.0 CA B:LYS156 4.9 58.1 1.0 CG B:LYS156 4.9 59.6 1.0 N B:ARG162 4.9 72.0 1.0 CA B:GLY161 4.9 70.6 1.0

M.Nishimura, T.Kaminishi, C.Takemoto, M.Kawazoe, T.Yoshida, A.Tanaka, S.Sugano, M.Shirouzu, T.Ohkubo, S.Yokoyama, Y.Kobayashi. Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold J.Mol.Biol. V. 377 421 2008.
ISSN: ISSN 0022-2836
PubMed: 18258260
DOI: 10.1016/J.JMB.2008.01.003