Atomistry » Potassium » PDB 2hzv-2o84 » 2o1s
Atomistry »
  Potassium »
    PDB 2hzv-2o84 »
      2o1s »

Potassium in PDB 2o1s: 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli

Enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli

All present enzymatic activity of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli:
2.2.1.7;

Protein crystallography data

The structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli, PDB code: 2o1s was solved by S.Xiang, G.Usunow, G.Lange, M.Busch, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 86.787, 171.154, 94.799, 90.00, 107.25, 90.00
R / Rfree (%) 19.1 / 23.4

Other elements in 2o1s:

The structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli (pdb code 2o1s). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli, PDB code: 2o1s:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 2o1s

Go back to Potassium Binding Sites List in 2o1s
Potassium binding site 1 out of 4 in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K2001

b:23.4
occ:1.00
 O A:PRO413 3.0 9.5 1.0
O A:GLY464 3.0 13.7 1.0
O A:TYR467 3.0 17.0 1.0
O A:TYR465 3.3 12.1 1.0
O A:HOH3146 3.3 19.2 1.0
O A:HOH3061 3.4 19.2 1.0
C A:TYR465 3.7 13.1 1.0
C A:PRO413 3.8 11.1 1.0
CB A:PRO413 3.8 12.6 1.0
C A:TYR467 4.0 16.2 1.0
CA A:TYR465 4.0 12.0 1.0
C A:GLY464 4.1 14.0 1.0
OD1 A:ASN468 4.1 26.4 1.0
N A:TYR467 4.2 14.3 1.0
CA A:PRO413 4.3 11.3 1.0
NZ A:LYS386 4.3 14.9 1.0
N A:HIS466 4.5 13.6 1.0
N A:TYR465 4.5 12.7 1.0
CA A:TYR467 4.6 14.8 1.0
N A:VAL414 4.7 11.7 1.0
N A:LEU415 4.7 10.0 1.0
CB A:LEU415 4.7 9.0 1.0
CG A:PRO413 4.8 11.3 1.0
C A:VAL414 4.8 10.3 1.0
C A:HIS466 4.8 13.9 1.0
N A:ASN468 4.8 17.9 1.0
OG A:SER472 4.9 6.5 1.0
CA A:ASN468 4.9 18.2 1.0
CA A:HIS466 5.0 12.4 1.0
CB A:TYR467 5.0 15.3 1.0

Potassium binding site 2 out of 4 in 2o1s

Go back to Potassium Binding Sites List in 2o1s
Potassium binding site 2 out of 4 in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2002

b:14.2
occ:1.00
 O B:GLY464 2.9 5.3 1.0
O B:TYR467 3.0 11.0 1.0
O B:TYR465 3.0 10.6 1.0
O B:PRO413 3.1 9.3 1.0
O B:HOH4064 3.3 17.6 1.0
O B:HOH4043 3.3 12.2 1.0
C B:TYR465 3.5 10.1 1.0
CB B:PRO413 3.8 2.9 1.0
CA B:TYR465 3.8 8.7 1.0
C B:TYR467 3.9 10.1 1.0
C B:PRO413 4.0 7.8 1.0
C B:GLY464 4.0 6.4 1.0
N B:TYR467 4.0 8.9 1.0
OD1 B:ASN468 4.0 19.2 1.0
N B:HIS466 4.3 9.9 1.0
CE B:LYS386 4.3 16.0 1.0
CA B:PRO413 4.4 5.3 1.0
N B:TYR465 4.4 7.7 1.0
CA B:TYR467 4.5 9.2 1.0
C B:HIS466 4.7 9.5 1.0
N B:ASN468 4.7 11.1 1.0
CA B:HIS466 4.8 9.9 1.0
CG B:PRO413 4.8 2.1 1.0
OG B:SER472 4.8 7.1 1.0
CA B:ASN468 4.9 13.1 1.0
CB B:LEU415 4.9 6.3 1.0
CB B:TYR467 4.9 9.8 1.0
N B:LEU415 5.0 5.1 1.0

Potassium binding site 3 out of 4 in 2o1s

Go back to Potassium Binding Sites List in 2o1s
Potassium binding site 3 out of 4 in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K2003

b:24.1
occ:1.00
 O C:TYR467 3.0 15.3 1.0
O C:GLY464 3.0 11.8 1.0
O C:PRO413 3.0 18.1 1.0
O C:TYR465 3.1 12.4 1.0
O C:HOH3119 3.2 26.2 1.0
O C:HOH3102 3.4 14.1 1.0
C C:TYR465 3.6 11.2 1.0
CB C:PRO413 3.8 16.4 1.0
C C:PRO413 3.9 16.5 1.0
C C:TYR467 4.0 16.8 1.0
CA C:TYR465 4.0 10.1 1.0
C C:GLY464 4.1 12.4 1.0
N C:TYR467 4.2 14.4 1.0
NZ C:LYS386 4.2 18.7 1.0
CA C:PRO413 4.3 17.0 1.0
OD1 C:ASN468 4.4 29.9 1.0
N C:HIS466 4.5 11.4 1.0
N C:TYR465 4.5 11.5 1.0
CA C:TYR467 4.6 15.1 1.0
CG C:PRO413 4.8 16.5 1.0
OG C:SER472 4.8 11.3 1.0
C C:HIS466 4.9 12.8 1.0
N C:VAL414 4.9 14.7 1.0
N C:LEU415 4.9 9.0 1.0
N C:ASN468 4.9 17.6 1.0
CB C:LEU415 4.9 6.7 1.0
C C:VAL414 4.9 10.3 1.0
CA C:HIS466 4.9 11.3 1.0
CB C:TYR467 5.0 14.7 1.0
CA C:ASN468 5.0 21.1 1.0

Potassium binding site 4 out of 4 in 2o1s

Go back to Potassium Binding Sites List in 2o1s
Potassium binding site 4 out of 4 in the 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K2004

b:34.6
occ:1.00
 O D:PRO413 3.0 13.9 1.0
O D:GLY464 3.1 7.0 1.0
O D:TYR467 3.1 14.6 1.0
O D:TYR465 3.2 10.4 1.0
O D:HOH4020 3.3 7.3 1.0
O D:HOH4106 3.5 30.3 1.0
C D:TYR465 3.6 10.5 1.0
CB D:PRO413 3.7 12.0 1.0
C D:PRO413 3.9 13.6 1.0
NZ D:LYS386 3.9 9.2 1.0
CA D:TYR465 3.9 8.1 1.0
ND2 D:ASN468 3.9 15.8 1.0
C D:TYR467 4.0 13.5 1.0
C D:GLY464 4.1 8.5 1.0
N D:TYR467 4.1 12.7 1.0
CA D:PRO413 4.2 13.3 1.0
N D:HIS466 4.4 10.4 1.0
N D:TYR465 4.5 7.5 1.0
CA D:TYR467 4.6 13.5 1.0
C D:HIS466 4.8 11.7 1.0
N D:ASN468 4.8 14.4 1.0
CA D:HIS466 4.9 11.5 1.0
CB D:LEU415 4.9 6.0 1.0
CA D:ASN468 4.9 15.0 1.0
N D:VAL414 4.9 12.8 1.0
CE D:LYS386 4.9 8.0 1.0
N D:LEU415 4.9 8.0 1.0
C D:VAL414 4.9 9.4 1.0
OG D:SER472 5.0 4.7 1.0
CG D:ASN468 5.0 17.6 1.0

Reference:

S.Xiang, G.Usunow, G.Lange, M.Busch, L.Tong. Crystal Structure of 1-Deoxy-D-Xylulose 5-Phosphate Synthase, A Crucial Enzyme For Isoprenoids Biosynthesis. J.Biol.Chem. V. 282 2676 2007.
ISSN: ISSN 0021-9258
PubMed: 17135236
DOI: 10.1074/JBC.M610235200
Page generated: Mon Aug 12 06:48:16 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy