Potassium in PDB 2kaz: Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop

The binding sites of Potassium atom in the Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop (pdb code 2kaz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop, PDB code: 2kaz:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:K27 b:0.0 occ:1.00 O6 B:DG26 2.5 0.0 1.0 O6 A:DG3 2.6 0.0 1.0 O6 A:DG11 2.7 0.0 1.0 O6 B:DG25 2.8 0.0 1.0 O6 B:DG14 2.8 0.0 1.0 O6 A:DG2 2.8 0.0 1.0 O6 A:DG12 2.9 0.0 1.0 O6 B:DG15 3.1 0.0 1.0 H1 A:DG3 3.2 0.0 1.0 H1 B:DG26 3.4 0.0 1.0 H1 A:DG11 3.4 0.0 1.0 H1 A:DG2 3.5 0.0 1.0 C6 B:DG25 3.5 0.0 1.0 C6 A:DG3 3.6 0.0 1.0 H1 B:DG14 3.6 0.0 1.0 C6 B:DG26 3.6 0.0 1.0 C6 A:DG11 3.6 0.0 1.0 C6 A:DG2 3.6 0.0 1.0 C6 A:DG12 3.7 0.0 1.0 C6 B:DG14 3.7 0.0 1.0 N1 A:DG3 3.8 0.0 1.0 H1 A:DG12 3.8 0.0 1.0 H1 B:DG15 3.9 0.0 1.0 N1 A:DG11 3.9 0.0 1.0 N1 B:DG26 3.9 0.0 1.0 N1 A:DG2 3.9 0.0 1.0 K A:K28 4.0 0.0 1.0 H1 B:DG25 4.0 0.0 1.0 N1 B:DG14 4.0 0.0 1.0 N1 A:DG12 4.0 0.0 1.0 C6 B:DG15 4.1 0.0 1.0 N1 B:DG25 4.1 0.0 1.0 N1 B:DG15 4.4 0.0 1.0 C5 B:DG25 4.5 0.0 1.0 C5 A:DG2 4.8 0.0 1.0 H62 A:DA4 4.8 0.0 1.0 N1 A:DA4 4.9 0.0 1.0 C5 A:DG12 4.9 0.0 1.0 C5 A:DG11 4.9 0.0 1.0 C5 A:DG3 4.9 0.0 1.0 C5 B:DG26 4.9 0.0 1.0 H3 A:DT10 4.9 0.0 1.0 N7 B:DG25 5.0 0.0 1.0 C5 B:DG14 5.0 0.0 1.0

Potassium binding site 2 out of 2 in the Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Connecting Loop within 5.0Å range: probe atom residue distance (Å) B Occ A:K28 b:0.0 occ:1.00 O6 A:DG13 2.5 0.0 1.0 O6 A:DG1 2.7 0.0 1.0 O6 B:DG25 2.7 0.0 1.0 O6 B:DG24 2.7 0.0 1.0 O6 B:DG16 2.7 0.0 1.0 O6 B:DG15 2.8 0.0 1.0 O6 A:DG12 2.9 0.0 1.0 O6 A:DG2 2.9 0.0 1.0 H1 B:DG16 3.2 0.0 1.0 H1 B:DG25 3.4 0.0 1.0 H1 B:DG24 3.5 0.0 1.0 H1 A:DG1 3.5 0.0 1.0 H1 A:DG12 3.5 0.0 1.0 C6 B:DG24 3.6 0.0 1.0 C6 A:DG13 3.6 0.0 1.0 C6 A:DG1 3.6 0.0 1.0 H1 A:DG13 3.6 0.0 1.0 C6 B:DG15 3.6 0.0 1.0 C6 B:DG25 3.7 0.0 1.0 C6 B:DG16 3.7 0.0 1.0 C6 A:DG12 3.7 0.0 1.0 H1 A:DG2 3.8 0.0 1.0 N1 B:DG16 3.8 0.0 1.0 C6 A:DG2 3.8 0.0 1.0 N1 B:DG24 3.9 0.0 1.0 N1 A:DG1 4.0 0.0 1.0 N1 A:DG13 4.0 0.0 1.0 N1 B:DG25 4.0 0.0 1.0 K A:K27 4.0 0.0 1.0 H1 B:DG15 4.0 0.0 1.0 N1 A:DG12 4.1 0.0 1.0 N1 A:DG2 4.1 0.0 1.0 N1 B:DG15 4.2 0.0 1.0 H3 B:DT23 4.7 0.0 1.0 C5 B:DG15 4.7 0.0 1.0 C5 A:DG12 4.9 0.0 1.0 C5 A:DG1 4.9 0.0 1.0 C5 B:DG24 4.9 0.0 1.0 C5 A:DG13 4.9 0.0 1.0 C5 B:DG25 5.0 0.0 1.0 C5 A:DG2 5.0 0.0 1.0 C5 B:DG16 5.0 0.0 1.0

G.D.Balkwill, T.P.Garner, H.E.Williams, M.S.Searle. Folding Topology of A Bimolecular Dna Quadruplex Containing A Stable Mini-Hairpin Motif Within the Diagonal Loop J.Mol.Biol. V. 385 1600 2009.
ISSN: ISSN 0022-2836
PubMed: 19070621
DOI: 10.1016/J.JMB.2008.11.050