Potassium in PDB 2j41: Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase

All present enzymatic activity of Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase:
2.7.4.8;

The structure of Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase, PDB code: 2j41 was solved by K.El Omari, B.Dhaliwal, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.40 / 1.9
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.012, 93.986, 83.936, 90.00, 110.59, 90.00
R / Rfree (%)	20.7 / 23.9

The binding sites of Potassium atom in the Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase (pdb code 2j41). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase, PDB code: 2j41:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in the Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase within 5.0Å range: probe atom residue distance (Å) B Occ B:K1207 b:31.0 occ:1.00 O B:GLU103 2.7 17.1 1.0 O B:HOH2083 2.8 30.0 1.0 OH B:TYR36 2.8 20.7 1.0 OG B:SER39 2.9 19.1 1.0 O B:HOH2030 2.9 18.7 1.0 N7 B:5GP1208 3.0 20.8 1.0 O B:HOH2029 3.1 26.5 1.0 C8 B:5GP1208 3.5 20.4 1.0 CB B:SER39 3.7 18.8 1.0 C B:GLU103 3.8 18.1 1.0 CZ B:TYR36 3.8 19.8 1.0 C5 B:5GP1208 3.9 19.7 1.0 OE1 B:GLU103 4.0 25.5 1.0 CE1 B:TYR36 4.3 17.9 1.0 CD B:GLU103 4.3 23.7 1.0 N B:GLU103 4.3 18.1 1.0 O6 B:5GP1208 4.3 18.5 1.0 CB B:GLU103 4.3 18.6 1.0 O B:SER37 4.3 17.9 1.0 O B:HOH2032 4.4 17.1 1.0 CA B:GLU103 4.4 18.1 1.0 C6 B:5GP1208 4.5 19.0 1.0 N9 B:5GP1208 4.5 21.9 1.0 CE1 B:TYR55 4.5 22.2 1.0 N B:SER39 4.6 19.1 1.0 OE2 B:GLU103 4.6 25.4 1.0 CG2 B:ILE104 4.7 17.5 1.0 C4 B:5GP1208 4.7 19.5 1.0 CA B:SER39 4.8 18.8 1.0 OH B:TYR55 4.9 22.8 1.0 CE2 B:TYR36 4.9 21.2 1.0 CG B:GLU103 4.9 19.4 1.0 N B:ILE104 4.9 17.6 1.0

Potassium binding site 2 out of 3 in the Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase within 5.0Å range: probe atom residue distance (Å) B Occ C:K1199 b:33.8 occ:1.00 O C:HOH2054 2.3 31.4 1.0 O C:GLU103 2.6 18.3 1.0 O C:HOH2034 2.6 17.6 1.0 OG C:SER39 2.7 17.6 1.0 OH C:TYR36 2.7 19.2 1.0 N7 C:5GP1200 3.1 18.0 1.0 O C:HOH2030 3.4 25.8 1.0 CB C:SER39 3.6 15.9 1.0 C8 C:5GP1200 3.7 18.8 1.0 OE1 C:GLU103 3.7 22.3 1.0 C C:GLU103 3.7 19.1 1.0 CZ C:TYR36 3.8 19.2 1.0 C5 C:5GP1200 3.9 17.0 1.0 CD C:GLU103 4.1 24.0 1.0 N C:GLU103 4.2 18.5 1.0 O C:HOH2079 4.2 20.9 1.0 CE1 C:TYR36 4.3 17.5 1.0 O C:SER37 4.3 16.0 1.0 CB C:GLU103 4.3 18.9 1.0 CA C:GLU103 4.3 18.6 1.0 O6 C:5GP1200 4.3 19.2 1.0 C6 C:5GP1200 4.5 18.9 1.0 N C:SER39 4.5 16.0 1.0 CG2 C:ILE104 4.6 18.9 1.0 OE2 C:GLU103 4.6 22.5 1.0 N9 C:5GP1200 4.7 18.9 1.0 CA C:SER39 4.7 15.7 1.0 CE1 C:TYR55 4.8 20.8 1.0 CG C:GLU103 4.8 18.3 1.0 C4 C:5GP1200 4.8 18.0 1.0 N C:ILE104 4.8 18.2 1.0 NH2 C:ARG23 4.9 27.1 1.0 CE2 C:TYR36 4.9 18.9 1.0 OH C:TYR55 5.0 21.0 1.0

Potassium binding site 3 out of 3 in the Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase within 5.0Å range: probe atom residue distance (Å) B Occ D:K1209 b:31.9 occ:1.00 OH D:TYR36 2.7 20.6 1.0 O D:GLU103 2.8 18.4 1.0 O D:HOH2028 2.8 20.7 1.0 OG D:SER39 2.8 19.5 1.0 N7 D:5GP1210 3.2 21.5 1.0 O D:HOH2043 3.3 23.8 1.0 CB D:SER39 3.6 17.7 1.0 OE1 D:GLU103 3.7 24.9 1.0 C8 D:5GP1210 3.7 20.0 1.0 CZ D:TYR36 3.8 20.4 1.0 C D:GLU103 3.9 18.6 1.0 C5 D:5GP1210 4.0 18.3 1.0 CD D:GLU103 4.2 23.4 1.0 CE1 D:TYR36 4.2 19.9 1.0 O D:SER37 4.3 18.7 1.0 O D:HOH2032 4.3 20.7 1.0 N D:GLU103 4.3 18.2 1.0 CB D:GLU103 4.4 18.3 1.0 O6 D:5GP1210 4.4 21.1 1.0 CA D:GLU103 4.4 18.3 1.0 N D:SER39 4.5 18.1 1.0 C6 D:5GP1210 4.6 18.9 1.0 CE1 D:TYR55 4.6 18.9 1.0 OE2 D:GLU103 4.7 24.2 1.0 CA D:SER39 4.7 17.5 1.0 N9 D:5GP1210 4.7 18.9 1.0 CG2 D:ILE104 4.8 19.4 1.0 CE2 D:TYR36 4.8 21.3 1.0 NH2 D:ARG23 4.8 35.4 1.0 CG D:GLU103 4.8 19.6 1.0 C4 D:5GP1210 4.9 18.3 1.0 OH D:TYR55 4.9 22.1 1.0 N D:ILE104 5.0 18.6 1.0

K.El Omari, B.Dhaliwal, M.Lockyer, I.Charles, A.R.Hawkins, D.K.Stammers. Structure of Staphylococcus Aureus Guanylate Monophosphate Kinase Acta Crystallogr.,Sect.F V. 62 949 2006.
ISSN: ISSN 1744-3091
PubMed: 17012781
DOI: 10.1107/S174430910603613X