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Potassium in PDB 2gjb: Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg)

Protein crystallography data

The structure of Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg), PDB code: 2gjb was solved by Y.Gan, C.J.Cardin, W.A.Denny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 25.750, 25.750, 78.994, 90.00, 90.00, 120.00
R / Rfree (%) 27 / 30.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg) (pdb code 2gjb). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg), PDB code: 2gjb:

Potassium binding site 1 out of 1 in 2gjb

Go back to Potassium Binding Sites List in 2gjb
Potassium binding site 1 out of 1 in the Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with the Oligonucleotide D(Cgtacg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K7

b:38.9
occ:0.50
O4 A:DT3 3.9 35.2 1.0
N6 A:DA4 4.1 30.9 1.0
C7 A:DT3 4.8 36.0 1.0
C4 A:DT3 4.9 32.9 1.0

Reference:

Y.Gan, C.J.Cardin, W.A.Denny. Crosslinking of Dna Duplexes: X-Ray Crystal Structure of An Unsubstituted Bisacridine with Oligonucleotide D(Cgtacg) To Be Published.
Page generated: Mon Aug 12 06:28:33 2024

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