Atomistry » Potassium » PDB 2fxi-2hw8 » 2fze
Atomistry »
  Potassium »
    PDB 2fxi-2hw8 »
      2fze »

Potassium in PDB 2fze: Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose

Enzymatic activity of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose

All present enzymatic activity of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose:
1.1.1.1; 1.1.1.284;

Protein crystallography data

The structure of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose, PDB code: 2fze was solved by P.C.Sanghani, H.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.234, 79.234, 310.964, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 20.9

Other elements in 2fze:

The structure of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose (pdb code 2fze). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose, PDB code: 2fze:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 2fze

Go back to Potassium Binding Sites List in 2fze
Potassium binding site 1 out of 2 in the Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K3001

b:16.3
occ:1.00
 OH A:TYR263 3.0 14.7 1.0
O A:ALA186 3.0 17.8 1.0
O A:LYS187 3.1 15.3 1.0
OE2 A:GLU189 3.1 19.7 1.0
O A:HOH4280 3.2 26.0 1.0
O A:HOH4292 3.2 43.2 1.0
O B:HOH4360 3.2 38.5 1.0
O A:HOH4376 3.3 45.0 1.0
C A:LYS187 3.7 17.8 1.0
CD A:GLU189 3.8 20.1 1.0
CZ A:TYR263 4.0 12.5 1.0
O A:HOH4048 4.0 16.9 1.0
CB A:LYS187 4.0 22.1 1.0
OE1 A:GLU189 4.0 17.7 1.0
C A:ALA186 4.1 18.6 1.0
CE2 A:TYR263 4.3 13.9 1.0
NZ B:LYS106 4.3 15.2 1.0
CA A:LYS187 4.4 19.5 1.0
O B:HOH4039 4.4 17.9 1.0
N A:LEU188 4.4 16.8 1.0
O3 A:PO44001 4.5 55.2 1.0
O A:HOH4141 4.6 26.4 1.0
CA A:LEU188 4.6 17.2 1.0
O A:HOH4125 4.7 27.4 1.0
N A:LYS187 4.7 18.5 1.0
CG A:GLU189 4.9 18.9 1.0
O A:HOH4394 4.9 49.2 1.0

Potassium binding site 2 out of 2 in 2fze

Go back to Potassium Binding Sites List in 2fze
Potassium binding site 2 out of 2 in the Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Binary Complex of Human Glutathione-Dependent Formaldehyde Dehydrogenase with Adp-Ribose within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K3002

b:18.5
occ:1.00
 O B:ALA186 3.0 16.8 1.0
OH B:TYR263 3.0 16.3 1.0
O B:LYS187 3.1 20.4 1.0
O A:HOH4287 3.2 24.8 1.0
OE2 B:GLU189 3.2 20.9 1.0
O A:HOH4439 3.2 41.5 1.0
O A:HOH4191 3.2 39.9 1.0
O B:HOH4369 3.4 46.5 1.0
C B:LYS187 3.7 20.6 1.0
CD B:GLU189 3.8 22.1 1.0
CB B:LYS187 3.9 21.0 1.0
CZ B:TYR263 4.0 16.3 1.0
O B:HOH4022 4.0 17.6 1.0
OE1 B:GLU189 4.1 20.3 1.0
C B:ALA186 4.1 17.7 1.0
CE2 B:TYR263 4.3 17.1 1.0
NZ A:LYS106 4.3 17.4 1.0
O A:HOH4351 4.3 45.8 1.0
CA B:LYS187 4.3 20.4 1.0
O B:HOH4501 4.3 46.2 1.0
O B:HOH4406 4.3 35.8 1.0
O A:HOH4098 4.4 19.8 1.0
O B:HOH4089 4.4 29.2 1.0
N B:LEU188 4.5 20.9 1.0
CA B:LEU188 4.7 19.6 1.0
N B:LYS187 4.7 17.7 1.0
CG B:GLU189 4.9 21.7 1.0

Reference:

P.C.Sanghani, W.I.Davis, L.Zhai, H.Robinson. Structure-Function Relationships in Human Glutathione-Dependent Formaldehyde Dehydrogenase. Role of Glu-67 and Arg-368 in the Catalytic Mechanism. Biochemistry V. 45 4819 2006.
ISSN: ISSN 0006-2960
PubMed: 16605250
DOI: 10.1021/BI052554Q
Page generated: Mon Aug 12 06:26:57 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy