Atomistry » Potassium » PDB 2c44-2frz » 2fhk
Atomistry »
  Potassium »
    PDB 2c44-2frz »
      2fhk »

Potassium in PDB 2fhk: Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes

Enzymatic activity of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes

All present enzymatic activity of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes:
2.3.1.101;

Protein crystallography data

The structure of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes, PDB code: 2fhk was solved by P.Acharya, E.Warkentin, R.K.Thauer, S.Shima, U.Ermler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 86.000, 74.200, 103.600, 90.00, 113.60, 90.00
R / Rfree (%) 21.8 / 24.5

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes (pdb code 2fhk). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 18 binding sites of Potassium where determined in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes, PDB code: 2fhk:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 1 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K701

b:15.4
occ:1.00
O A:HOH6469 2.6 17.6 1.0
O A:ALA196 2.7 13.4 1.0
O A:ASP57 2.8 16.2 1.0
O A:VAL193 2.8 11.9 1.0
O A:ILE190 3.1 16.1 1.0
OD2 A:ASP57 3.1 26.4 1.0
O A:LYS191 3.2 17.7 1.0
C A:ASP57 3.6 15.9 1.0
C A:LYS191 3.7 16.4 1.0
C A:VAL193 3.7 14.0 1.0
C A:ALA196 3.9 13.7 1.0
CA A:ASP57 3.9 15.9 1.0
CA A:LYS191 4.0 17.4 1.0
N A:VAL193 4.1 13.7 1.0
C A:ILE190 4.1 13.9 1.0
CG A:ASP57 4.3 21.9 1.0
CA A:VAL193 4.4 13.3 1.0
N A:LYS191 4.5 15.6 1.0
N A:ALA196 4.5 12.7 1.0
O A:ILE56 4.5 13.1 1.0
N A:GLY192 4.6 15.7 1.0
N A:GLU194 4.6 15.7 1.0
CA A:ALA196 4.6 13.0 1.0
CB A:ASP57 4.7 16.8 1.0
N A:CYS58 4.8 15.9 1.0
CA A:GLU194 4.8 16.9 1.0
C A:GLY192 4.8 15.1 1.0
N A:TYR197 4.9 13.1 1.0
CB A:VAL193 4.9 13.2 1.0
CB A:ALA196 4.9 14.1 1.0
CG2 A:ILE190 4.9 13.3 1.0

Potassium binding site 2 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 2 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K708

b:17.0
occ:1.00
O A:ALA54 2.7 11.4 1.0
O A:PRO199 2.8 10.8 1.0
O A:THR41 2.8 13.3 1.0
OE2 B:GLU39 2.9 25.9 1.0
OE1 B:GLU39 3.2 23.6 1.0
O A:GLY44 3.2 14.6 1.0
CD B:GLU39 3.4 24.7 1.0
O A:HOH6333 3.4 40.2 1.0
O A:HOH6139 3.5 38.4 1.0
C A:ALA54 3.7 10.6 1.0
C A:PRO199 3.7 10.9 1.0
C A:GLY44 3.8 14.8 1.0
C A:THR41 3.9 12.4 1.0
CA A:PRO199 4.1 11.7 1.0
CA A:GLY44 4.4 15.2 1.0
N A:THR45 4.4 13.0 1.0
N A:GLY44 4.5 15.7 1.0
N A:ALA54 4.5 10.9 1.0
CA A:ALA54 4.5 10.1 1.0
N A:GLY55 4.6 9.1 1.0
CA A:GLY55 4.6 10.5 1.0
CB A:PRO199 4.6 11.0 1.0
CB A:THR41 4.6 13.0 1.0
CA A:THR45 4.7 13.9 1.0
CA A:GLY42 4.7 13.8 1.0
CG2 A:THR45 4.8 13.3 1.0
N A:GLY42 4.8 13.3 1.0
CB A:ALA54 4.8 8.9 1.0
OG1 A:THR41 4.8 12.0 1.0
CA A:THR41 4.9 12.6 1.0
CG B:GLU39 4.9 18.7 1.0
O A:HOH6275 4.9 22.0 1.0
N A:PHE200 4.9 9.8 1.0

Potassium binding site 3 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 3 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K711

b:13.5
occ:1.00
O A:ALA100 2.6 11.8 1.0
O A:HOH6250 2.8 19.3 1.0
O A:MET98 2.9 12.7 1.0
O A:VAL97 2.9 15.4 1.0
O A:ALA103 3.0 13.8 1.0
C A:MET98 3.5 13.6 1.0
N A:ALA103 3.7 13.6 1.0
C A:ALA100 3.7 11.0 1.0
CD1 A:PHE152 3.8 13.8 1.0
CA A:MET98 3.9 15.2 1.0
C A:ALA103 3.9 12.2 1.0
C A:VAL97 4.0 14.4 1.0
N A:ALA100 4.0 12.8 1.0
CA A:ALA103 4.1 12.4 1.0
CB A:ALA103 4.3 11.4 1.0
CE1 A:PHE152 4.3 12.8 1.0
N A:THR102 4.4 10.8 1.0
CA A:ALA100 4.4 10.9 1.0
N A:THR99 4.4 14.4 1.0
C A:THR102 4.4 12.2 1.0
N A:MET98 4.4 14.6 1.0
CB B:ALA206 4.4 10.4 1.0
C A:THR99 4.5 14.2 1.0
CG A:PHE152 4.6 16.2 1.0
C A:PRO101 4.6 10.8 1.0
OE2 A:GLU149 4.7 18.4 1.0
O A:HOH6306 4.7 9.7 1.0
N A:PRO101 4.8 10.9 1.0
CB A:PHE152 4.8 17.2 1.0
CA A:THR102 4.8 11.8 1.0
CB A:ALA100 4.8 9.3 1.0
CA A:THR99 4.9 13.6 1.0
CA A:PRO101 4.9 10.3 1.0

Potassium binding site 4 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 4 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K716

b:15.4
occ:1.00
O A:HOH6252 2.7 32.4 1.0
O A:LEU251 2.7 16.2 1.0
OE1 A:GLU113 2.7 22.0 1.0
O A:HOH6472 2.8 27.8 1.0
O A:THR162 2.8 17.4 1.0
OG1 A:THR161 2.8 18.6 1.0
C A:THR162 3.8 16.0 1.0
CD A:GLU113 3.9 27.8 1.0
C A:LEU251 3.9 16.3 1.0
CB A:THR161 4.1 16.7 1.0
OE2 A:GLU115 4.3 27.6 1.0
CG2 A:THR161 4.3 17.6 1.0
CB A:GLU113 4.4 22.6 1.0
CB A:ASN252 4.4 17.6 1.0
N A:THR162 4.4 15.9 1.0
CA A:GLY163 4.5 16.8 1.0
CA A:ASN252 4.5 17.7 1.0
N A:GLY163 4.6 16.8 1.0
O A:GLU113 4.6 22.4 1.0
O A:HOH6026 4.6 28.8 1.0
N A:ASN252 4.6 17.0 1.0
OE2 A:GLU113 4.7 28.2 1.0
CA A:GLU113 4.7 23.2 1.0
CG A:GLU113 4.7 22.8 1.0
CA A:THR162 4.8 16.3 1.0
CA A:LEU251 4.9 15.6 1.0

Potassium binding site 5 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 5 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K704

b:15.3
occ:1.00
O B:ALA196 2.7 13.6 1.0
O B:VAL193 2.8 11.6 1.0
O B:ASP57 2.8 16.1 1.0
O B:ILE190 3.0 16.0 1.0
O B:LYS191 3.1 17.6 1.0
OD2 B:ASP57 3.1 26.3 1.0
C B:ASP57 3.6 15.9 1.0
C B:LYS191 3.7 16.4 1.0
C B:VAL193 3.7 14.1 1.0
C B:ALA196 3.9 13.6 1.0
CA B:ASP57 4.0 15.9 1.0
CA B:LYS191 4.0 17.3 1.0
N B:VAL193 4.0 13.7 1.0
C B:ILE190 4.1 14.1 1.0
CG B:ASP57 4.3 21.9 1.0
CA B:VAL193 4.4 13.2 1.0
N B:LYS191 4.5 15.6 1.0
N B:ALA196 4.5 13.0 1.0
O B:ILE56 4.5 13.2 1.0
N B:GLY192 4.6 15.7 1.0
N B:GLU194 4.6 15.6 1.0
CA B:ALA196 4.6 13.0 1.0
CB B:ASP57 4.7 16.8 1.0
N B:CYS58 4.8 16.0 1.0
CA B:GLU194 4.8 16.8 1.0
C B:GLY192 4.8 15.1 1.0
N B:TYR197 4.9 13.3 1.0
CB B:VAL193 4.9 13.3 1.0
CB B:ALA196 4.9 14.0 1.0
CG2 B:ILE190 5.0 13.4 1.0

Potassium binding site 6 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 6 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K706

b:14.8
occ:1.00
O B:ALA54 2.6 11.5 1.0
O B:PRO199 2.6 10.9 1.0
O B:THR41 3.0 13.3 1.0
OE2 A:GLU39 3.0 25.9 1.0
OE1 A:GLU39 3.2 23.6 1.0
O B:GLY44 3.3 14.4 1.0
CD A:GLU39 3.5 24.7 1.0
C B:PRO199 3.6 11.2 1.0
C B:ALA54 3.7 10.7 1.0
C B:GLY44 3.8 14.8 1.0
CA B:PRO199 4.0 11.5 1.0
C B:THR41 4.1 12.4 1.0
O B:HOH6330 4.3 27.5 1.0
N B:THR45 4.5 13.0 1.0
CA B:GLY44 4.5 15.2 1.0
CA B:GLY55 4.5 10.3 1.0
N B:GLY55 4.5 9.0 1.0
CB B:PRO199 4.5 11.2 1.0
O A:HOH6097 4.5 24.6 1.0
N B:ALA54 4.6 11.1 1.0
CA B:ALA54 4.6 10.0 1.0
N B:GLY44 4.6 15.7 1.0
CB B:THR41 4.7 12.9 1.0
CA B:THR45 4.7 14.0 1.0
CG2 B:THR45 4.8 13.4 1.0
N B:PHE200 4.8 9.7 1.0
OG1 B:THR41 4.8 12.0 1.0
CB B:ALA54 4.8 8.9 1.0
CA B:GLY42 4.9 13.8 1.0
N B:GLY42 4.9 13.2 1.0
CG A:GLU39 4.9 18.9 1.0
CA B:THR41 5.0 12.7 1.0

Potassium binding site 7 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 7 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K709

b:12.8
occ:1.00
O B:ALA100 2.6 11.8 1.0
O B:HOH6211 2.8 23.5 1.0
O B:MET98 2.8 12.7 1.0
O B:VAL97 2.9 15.3 1.0
O B:ALA103 3.0 13.8 1.0
C B:MET98 3.4 13.6 1.0
N B:ALA103 3.7 13.5 1.0
C B:ALA100 3.7 11.1 1.0
CD1 B:PHE152 3.8 13.7 1.0
CA B:MET98 3.8 15.1 1.0
C B:ALA103 3.9 12.4 1.0
C B:VAL97 4.0 14.3 1.0
N B:ALA100 4.0 12.8 1.0
CA B:ALA103 4.1 12.3 1.0
CB B:ALA103 4.2 11.5 1.0
CE1 B:PHE152 4.3 12.8 1.0
CA B:ALA100 4.3 10.9 1.0
N B:THR99 4.4 14.3 1.0
N B:THR102 4.4 10.7 1.0
N B:MET98 4.4 14.5 1.0
C B:THR102 4.4 12.2 1.0
C B:THR99 4.4 14.1 1.0
CB A:ALA206 4.5 10.4 1.0
CG B:PHE152 4.6 16.2 1.0
OE2 B:GLU149 4.7 18.3 1.0
C B:PRO101 4.7 10.8 1.0
O B:HOH6080 4.7 7.5 1.0
N B:PRO101 4.8 10.9 1.0
CB B:PHE152 4.8 17.2 1.0
CA B:THR102 4.8 12.0 1.0
CB B:ALA100 4.8 9.3 1.0
CA B:THR99 4.9 13.6 1.0
CA B:PRO101 5.0 10.3 1.0

Potassium binding site 8 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 8 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K713

b:15.6
occ:1.00
O B:HOH6460 2.6 19.6 1.0
O B:THR162 2.7 17.4 1.0
O B:LEU251 2.8 16.3 1.0
OE1 B:GLU113 2.8 22.1 1.0
OG1 B:THR161 2.9 18.6 1.0
C B:THR162 3.8 16.1 1.0
C B:LEU251 3.9 16.3 1.0
CD B:GLU113 4.0 27.8 1.0
CB B:THR161 4.2 16.7 1.0
OE2 B:GLU115 4.2 27.4 1.0
CG2 B:THR161 4.3 17.5 1.0
N B:THR162 4.4 15.8 1.0
CB B:ASN252 4.4 17.6 1.0
CA B:GLY163 4.5 16.8 1.0
CB B:GLU113 4.5 22.6 1.0
N B:GLY163 4.5 16.9 1.0
CA B:ASN252 4.5 17.8 1.0
O B:GLU113 4.6 22.3 1.0
N B:ASN252 4.7 16.8 1.0
CA B:THR162 4.7 16.4 1.0
OE2 B:GLU113 4.8 28.3 1.0
CA B:GLU113 4.8 23.1 1.0
CG B:GLU113 4.8 22.7 1.0
CA B:LEU251 5.0 15.6 1.0

Potassium binding site 9 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 9 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K717

b:35.1
occ:1.00
OXT B:PHE296 2.8 36.4 1.0
O B:HIS293 2.8 22.2 1.0
O B:HOH6296 3.8 20.6 1.0
C B:HIS293 3.9 20.6 1.0
C B:PHE296 3.9 33.6 1.0
O B:HOH6047 4.2 41.7 1.0
CE B:MET1 4.2 24.4 1.0
CA B:ASP294 4.4 26.4 1.0
N B:ASP294 4.6 23.5 1.0
O B:PHE296 4.6 35.4 1.0
C B:ASP294 4.7 26.6 1.0
O B:ASP294 4.7 26.6 1.0
N B:PHE296 4.8 29.0 1.0
CA B:PHE296 4.9 31.2 1.0
O B:HOH6370 4.9 30.2 1.0
OD1 B:ASP294 4.9 41.2 1.0
CA B:HIS293 4.9 18.9 1.0

Potassium binding site 10 out of 18 in 2fhk

Go back to Potassium Binding Sites List in 2fhk
Potassium binding site 10 out of 18 in the Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K702

b:13.2
occ:1.00
O C:ALA54 2.7 9.3 1.0
O C:PRO199 2.7 10.3 1.0
OE2 D:GLU39 2.9 24.6 1.0
O C:THR41 2.9 12.8 1.0
O C:GLY44 3.1 14.8 1.0
OE1 D:GLU39 3.1 16.6 1.0
O C:HOH6283 3.3 26.2 1.0
CD D:GLU39 3.3 21.8 1.0
C C:PRO199 3.7 10.3 1.0
C C:GLY44 3.7 15.0 1.0
C C:ALA54 3.7 9.3 1.0
C C:THR41 4.0 13.8 1.0
CA C:PRO199 4.1 10.0 1.0
CA C:GLY44 4.4 14.2 1.0
N C:THR45 4.4 14.9 1.0
N C:GLY44 4.5 13.5 1.0
CA C:GLY55 4.6 9.6 1.0
N C:GLY55 4.6 8.7 1.0
N C:ALA54 4.6 9.5 1.0
CA C:ALA54 4.6 8.8 1.0
CB C:PRO199 4.6 9.5 1.0
CB C:THR41 4.7 13.6 1.0
CA C:THR45 4.7 15.1 1.0
CA C:GLY42 4.7 12.6 1.0
CG2 C:THR45 4.7 11.0 1.0
CG D:GLU39 4.8 18.1 1.0
N C:GLY42 4.8 12.7 1.0
N C:PHE200 4.9 10.4 1.0
OG1 C:THR41 4.9 11.4 1.0
CA C:THR41 4.9 13.4 1.0
CB C:ALA54 5.0 7.8 1.0

Reference:

P.Acharya, E.Warkentin, U.Ermler, R.K.Thauer, S.Shima. The Structure of Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with Its Coenzymes J.Mol.Biol. V. 357 870 2006.
ISSN: ISSN 0022-2836
PubMed: 16466742
DOI: 10.1016/J.JMB.2006.01.015
Page generated: Sun Dec 13 23:09:45 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy