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Potassium in PDB 2dcn: Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)

Enzymatic activity of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)

All present enzymatic activity of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form):
2.7.1.45;

Protein crystallography data

The structure of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form), PDB code: 2dcn was solved by S.Okazaki, H.Onda, A.Suzuki, S.Kuramitsu, R.Masui, T.Yamane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.37 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.638, 150.229, 154.757, 90.00, 93.73, 90.00
R / Rfree (%) 17.5 / 22.8

Other elements in 2dcn:

The structure of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) also contains other interesting chemical elements:

Magnesium (Mg) 45 atoms

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) (pdb code 2dcn). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form), PDB code: 2dcn:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 12 in 2dcn

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Potassium binding site 1 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K5001

b:21.4
occ:1.00
O A:ASN286 2.8 18.6 1.0
O A:ILE289 2.8 19.4 1.0
O A:THR252 2.8 22.3 1.0
O A:ASP250 2.9 20.1 1.0
O A:GLY291 3.0 20.3 1.0
O A:HOH5048 3.0 19.8 1.0
ND2 A:ASN286 3.2 17.1 1.0
C A:ASN286 3.7 18.7 1.0
C A:GLY291 3.8 19.9 1.0
C A:ILE289 4.0 19.2 1.0
C A:THR252 4.0 22.2 1.0
C A:ASP250 4.0 20.7 1.0
CG A:ASN286 4.1 19.6 1.0
N A:GLY291 4.2 18.3 1.0
CB A:ASP250 4.3 20.6 1.0
CA A:ASP292 4.4 19.9 1.0
N A:ASP292 4.4 20.1 1.0
N A:VAL287 4.4 18.1 1.0
CA A:VAL287 4.5 17.6 1.0
OD2 A:ASP250 4.5 20.1 1.0
N A:THR252 4.5 21.6 1.0
CG2 A:ILE289 4.5 21.4 1.0
O A:HOH5012 4.6 16.3 1.0
CG A:ASP250 4.6 20.5 1.0
CA A:ASN286 4.6 19.3 1.0
C A:VAL251 4.6 21.3 1.0
CA A:GLY291 4.7 19.2 1.0
CB A:ASN286 4.7 19.5 1.0
OD1 A:ASP292 4.7 18.6 1.0
N A:ILE289 4.7 19.3 1.0
C A:ARG290 4.7 18.4 1.0
CA A:ASP250 4.7 20.5 1.0
CA A:THR252 4.8 21.9 1.0
OD1 A:ASN286 4.8 21.5 1.0
CA A:ARG290 4.8 18.4 1.0
N A:ARG290 4.8 18.8 1.0
CA A:ILE289 4.9 19.9 1.0
C A:VAL287 4.9 17.3 1.0
O A:VAL251 4.9 21.7 1.0
N A:VAL251 4.9 20.9 1.0
N A:GLY253 5.0 22.4 1.0

Potassium binding site 2 out of 12 in 2dcn

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Potassium binding site 2 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K5002

b:19.9
occ:1.00
O B:ASN286 2.7 17.2 1.0
O B:ILE289 2.8 20.3 1.0
O B:ASP250 2.8 18.4 1.0
O B:THR252 2.9 22.3 1.0
O B:GLY291 3.1 18.6 1.0
O B:HOH5061 3.1 26.6 1.0
ND2 B:ASN286 3.1 14.1 1.0
C B:ASN286 3.7 17.3 1.0
C B:GLY291 3.9 19.0 1.0
C B:ILE289 3.9 19.6 1.0
C B:ASP250 3.9 19.2 1.0
CG B:ASN286 4.0 18.6 1.0
C B:THR252 4.0 22.1 1.0
N B:GLY291 4.1 19.3 1.0
CB B:ASP250 4.3 18.3 1.0
CA B:ASP292 4.4 18.1 1.0
OD2 B:ASP250 4.4 16.5 1.0
N B:THR252 4.4 21.4 1.0
N B:VAL287 4.5 17.7 1.0
CA B:VAL287 4.5 18.0 1.0
CG B:ASP250 4.5 17.8 1.0
N B:ASP292 4.5 19.0 1.0
CA B:ASN286 4.5 17.1 1.0
O B:HOH5013 4.6 16.6 1.0
C B:VAL251 4.6 20.8 1.0
CB B:ASN286 4.6 16.4 1.0
CA B:GLY291 4.7 18.9 1.0
C B:ARG290 4.7 19.0 1.0
CA B:ASP250 4.7 19.0 1.0
OD1 B:ASN286 4.7 23.1 1.0
CG1 B:ILE289 4.7 20.9 1.0
CA B:THR252 4.7 22.2 1.0
N B:ILE289 4.7 19.3 1.0
CA B:ARG290 4.8 19.4 1.0
OD1 B:ASP292 4.8 16.2 1.0
N B:ARG290 4.8 19.1 1.0
CA B:ILE289 4.9 19.9 1.0
C B:VAL287 4.9 18.6 1.0
N B:VAL251 4.9 19.6 1.0
O B:VAL251 5.0 21.8 1.0

Potassium binding site 3 out of 12 in 2dcn

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Potassium binding site 3 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K5003

b:22.2
occ:1.00
O C:ASN286 2.8 17.6 1.0
O C:ILE289 2.8 17.7 1.0
O C:THR252 2.8 19.0 1.0
O C:ASP250 2.9 19.7 1.0
O C:HOH5015 2.9 16.6 1.0
ND2 C:ASN286 3.1 17.3 1.0
O C:GLY291 3.1 18.6 1.0
C C:ASN286 3.7 17.2 1.0
C C:GLY291 3.8 18.6 1.0
C C:ASP250 3.9 19.9 1.0
C C:ILE289 4.0 17.7 1.0
CG C:ASN286 4.0 18.9 1.0
C C:THR252 4.0 19.2 1.0
N C:GLY291 4.1 17.6 1.0
CB C:ASP250 4.3 20.2 1.0
OD2 C:ASP250 4.3 19.9 1.0
N C:ASP292 4.3 19.3 1.0
CA C:ASP292 4.4 19.5 1.0
CG C:ASP250 4.4 20.5 1.0
N C:THR252 4.5 19.5 1.0
N C:VAL287 4.5 17.0 1.0
CA C:VAL287 4.5 17.1 1.0
CA C:ASN286 4.6 17.4 1.0
CA C:GLY291 4.6 17.6 1.0
OD1 C:ASN286 4.6 21.4 1.0
CG1 C:ILE289 4.6 18.7 1.0
C C:ARG290 4.6 17.1 1.0
C C:VAL251 4.7 19.8 1.0
CA C:ASP250 4.7 20.3 1.0
O C:HOH5033 4.7 19.2 1.0
CB C:ASN286 4.7 17.1 1.0
OD1 C:ASP292 4.7 18.8 1.0
N C:ILE289 4.7 18.9 1.0
CA C:ARG290 4.7 16.6 1.0
CA C:THR252 4.8 19.4 1.0
N C:ARG290 4.8 17.0 1.0
CA C:ILE289 4.9 18.6 1.0
N C:VAL251 4.9 19.7 1.0
C C:VAL287 4.9 17.7 1.0

Potassium binding site 4 out of 12 in 2dcn

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Potassium binding site 4 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K5004

b:20.7
occ:1.00
O D:ASP250 2.7 19.7 1.0
O D:ASN286 2.8 18.4 1.0
O D:THR252 2.8 19.4 1.0
O D:ILE289 2.8 16.4 1.0
O D:HOH5065 3.1 18.4 1.0
O D:GLY291 3.1 20.2 1.0
ND2 D:ASN286 3.3 18.1 1.0
C D:ASN286 3.8 18.2 1.0
C D:ASP250 3.8 19.6 1.0
C D:GLY291 3.9 18.9 1.0
C D:ILE289 4.0 17.3 1.0
C D:THR252 4.0 19.4 1.0
N D:GLY291 4.1 18.2 1.0
CG D:ASN286 4.1 19.3 1.0
CB D:ASP250 4.2 18.7 1.0
OD2 D:ASP250 4.3 17.0 1.0
CG D:ASP250 4.4 17.6 1.0
N D:THR252 4.4 19.2 1.0
CA D:ASP292 4.4 18.4 1.0
N D:ASP292 4.5 18.6 1.0
CA D:ASP250 4.5 19.1 1.0
CA D:VAL287 4.5 17.0 1.0
N D:VAL287 4.6 17.7 1.0
CA D:ASN286 4.6 18.4 1.0
C D:VAL251 4.6 19.5 1.0
CA D:GLY291 4.7 18.8 1.0
CG1 D:ILE289 4.7 16.8 1.0
CB D:ASN286 4.7 18.3 1.0
O D:HOH5063 4.7 15.5 1.0
C D:ARG290 4.7 18.1 1.0
OD1 D:ASP292 4.7 14.9 1.0
N D:ILE289 4.8 18.4 1.0
N D:VAL251 4.8 19.5 1.0
CA D:THR252 4.8 19.3 1.0
CA D:ARG290 4.8 17.3 1.0
N D:ARG290 4.8 17.5 1.0
C D:VAL287 4.9 17.5 1.0
OD1 D:ASN286 4.9 20.9 1.0
CA D:ILE289 4.9 17.8 1.0
CA D:VAL251 4.9 19.4 1.0
N D:GLY253 5.0 19.1 1.0

Potassium binding site 5 out of 12 in 2dcn

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Potassium binding site 5 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K5005

b:23.4
occ:1.00
O E:ASP250 2.7 21.2 1.0
O E:ASN286 2.8 19.8 1.0
O E:THR252 2.8 20.6 1.0
O E:ILE289 2.8 20.4 1.0
O E:HOH5029 3.0 25.1 1.0
O E:GLY291 3.0 19.5 1.0
ND2 E:ASN286 3.3 16.8 1.0
C E:ASN286 3.7 19.8 1.0
C E:GLY291 3.8 19.8 1.0
C E:ASP250 3.8 21.1 1.0
C E:ILE289 4.0 20.6 1.0
C E:THR252 4.0 20.4 1.0
N E:GLY291 4.2 18.9 1.0
CB E:ASP250 4.2 20.8 1.0
CG E:ASN286 4.2 20.7 1.0
CA E:ASP292 4.3 19.4 1.0
CG E:ASP250 4.3 20.7 1.0
N E:ASP292 4.4 20.0 1.0
N E:THR252 4.4 20.4 1.0
OD2 E:ASP250 4.4 19.1 1.0
C E:VAL251 4.5 21.1 1.0
N E:VAL287 4.5 19.6 1.0
CG2 E:ILE289 4.5 21.2 1.0
CA E:ASN286 4.6 19.6 1.0
CA E:ASP250 4.6 21.2 1.0
CA E:VAL287 4.6 20.0 1.0
O E:HOH5021 4.6 23.4 1.0
C E:ARG290 4.6 18.9 1.0
CA E:GLY291 4.6 18.7 1.0
CA E:THR252 4.7 20.3 1.0
CB E:ASN286 4.7 19.2 1.0
CA E:ARG290 4.7 19.5 1.0
N E:ILE289 4.7 20.8 1.0
OD1 E:ASP292 4.7 15.0 1.0
N E:VAL251 4.8 21.3 1.0
N E:ARG290 4.8 20.4 1.0
O E:VAL251 4.8 21.2 1.0
CA E:ILE289 4.8 21.4 1.0
CA E:VAL251 4.9 21.0 1.0
OD1 E:ASP250 4.9 21.2 1.0
C E:VAL287 4.9 20.5 1.0
N E:GLY253 5.0 20.1 1.0

Potassium binding site 6 out of 12 in 2dcn

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Potassium binding site 6 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K5006

b:24.3
occ:1.00
O F:ASN286 2.7 19.1 1.0
O F:THR252 2.8 19.2 1.0
O F:ASP250 2.8 18.4 1.0
O F:HOH5015 2.8 17.3 1.0
O F:ILE289 2.8 18.9 1.0
O F:GLY291 3.1 19.8 1.0
ND2 F:ASN286 3.2 17.2 1.0
C F:ASN286 3.7 18.6 1.0
C F:GLY291 3.9 19.3 1.0
C F:ASP250 3.9 18.5 1.0
C F:THR252 3.9 19.4 1.0
C F:ILE289 4.0 19.6 1.0
CG F:ASN286 4.0 19.2 1.0
CB F:ASP250 4.2 18.1 1.0
N F:GLY291 4.3 18.8 1.0
CA F:ASP292 4.3 18.4 1.0
N F:THR252 4.4 19.0 1.0
OD2 F:ASP250 4.4 18.0 1.0
CG F:ASP250 4.4 17.7 1.0
N F:ASP292 4.4 19.0 1.0
CA F:ASN286 4.5 17.9 1.0
C F:VAL251 4.5 18.8 1.0
N F:VAL287 4.5 18.7 1.0
CA F:VAL287 4.6 19.4 1.0
CA F:ASP250 4.6 18.3 1.0
CB F:ASN286 4.6 17.5 1.0
OD1 F:ASP292 4.7 18.7 1.0
CA F:THR252 4.7 19.3 1.0
O F:HOH5012 4.7 15.1 1.0
CG1 F:ILE289 4.7 20.8 1.0
CA F:GLY291 4.7 18.7 1.0
C F:ARG290 4.8 19.1 1.0
OD1 F:ASN286 4.8 21.8 1.0
CA F:ARG290 4.8 19.0 1.0
N F:ILE289 4.8 20.2 1.0
N F:VAL251 4.9 18.6 1.0
N F:ARG290 4.9 19.2 1.0
O F:VAL251 4.9 18.0 1.0
N F:GLY253 4.9 19.1 1.0
CA F:ILE289 4.9 20.3 1.0
C F:VAL287 5.0 19.9 1.0
CA F:VAL251 5.0 18.4 1.0

Potassium binding site 7 out of 12 in 2dcn

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Potassium binding site 7 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K5007

b:26.1
occ:1.00
O G:ASN286 2.8 21.8 1.0
O G:THR252 2.8 20.0 1.0
O G:HOH5016 2.8 17.3 1.0
O G:ASP250 2.9 19.8 1.0
O G:ILE289 2.9 20.4 1.0
ND2 G:ASN286 3.1 18.5 1.0
O G:GLY291 3.1 22.6 1.0
C G:ASN286 3.8 21.4 1.0
C G:GLY291 3.8 22.4 1.0
C G:THR252 4.0 20.4 1.0
C G:ASP250 4.0 20.9 1.0
C G:ILE289 4.1 20.7 1.0
CG G:ASN286 4.1 21.3 1.0
N G:GLY291 4.2 21.4 1.0
CB G:ASP250 4.3 20.9 1.0
CA G:ASP292 4.3 22.1 1.0
N G:ASP292 4.4 22.5 1.0
N G:THR252 4.4 20.9 1.0
CA G:VAL287 4.5 20.7 1.0
OD2 G:ASP250 4.5 20.4 1.0
N G:VAL287 4.6 21.0 1.0
CG G:ASP250 4.6 20.7 1.0
O G:HOH5011 4.6 14.2 1.0
C G:VAL251 4.6 21.0 1.0
CA G:ASN286 4.6 21.1 1.0
CA G:GLY291 4.7 21.9 1.0
CA G:THR252 4.7 20.2 1.0
CA G:ASP250 4.7 21.1 1.0
C G:ARG290 4.7 21.5 1.0
CB G:ASN286 4.8 21.0 1.0
OD1 G:ASP292 4.8 22.7 1.0
OD1 G:ASN286 4.8 22.7 1.0
CG1 G:ILE289 4.8 22.2 1.0
CA G:ARG290 4.8 20.9 1.0
O G:VAL251 4.8 21.6 1.0
N G:ILE289 4.9 20.8 1.0
N G:ARG290 4.9 21.0 1.0
C G:VAL287 4.9 20.6 1.0
N G:GLY253 5.0 20.2 1.0
N G:VAL251 5.0 20.8 1.0
CA G:ILE289 5.0 21.1 1.0

Potassium binding site 8 out of 12 in 2dcn

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Potassium binding site 8 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:K5008

b:23.1
occ:1.00
O H:ASN286 2.6 18.5 1.0
O H:ASP250 2.7 18.1 1.0
O H:ILE289 2.8 20.4 1.0
O H:THR252 2.9 19.6 1.0
O H:HOH5044 3.1 13.1 1.0
O H:GLY291 3.2 21.0 1.0
ND2 H:ASN286 3.2 17.4 1.0
C H:ASN286 3.6 18.6 1.0
C H:ASP250 3.8 18.2 1.0
C H:GLY291 3.9 20.6 1.0
C H:ILE289 4.0 20.4 1.0
CG H:ASN286 4.1 19.2 1.0
C H:THR252 4.1 19.1 1.0
CB H:ASP250 4.2 17.6 1.0
N H:GLY291 4.3 20.5 1.0
OD2 H:ASP250 4.4 17.5 1.0
CA H:ASP292 4.4 19.2 1.0
N H:THR252 4.4 18.9 1.0
CG H:ASP250 4.4 17.7 1.0
CA H:VAL287 4.4 18.7 1.0
N H:VAL287 4.5 18.7 1.0
N H:ASP292 4.5 20.2 1.0
CA H:ASN286 4.5 18.3 1.0
CA H:ASP250 4.6 17.9 1.0
C H:VAL251 4.6 19.4 1.0
CB H:ASN286 4.6 17.8 1.0
O H:HOH5025 4.6 23.0 1.0
CG1 H:ILE289 4.7 21.3 1.0
C H:ARG290 4.8 20.6 1.0
CA H:GLY291 4.8 20.6 1.0
C H:VAL287 4.8 18.9 1.0
N H:ILE289 4.8 20.1 1.0
CA H:THR252 4.8 19.1 1.0
OD1 H:ASN286 4.8 21.4 1.0
N H:ARG290 4.8 20.1 1.0
CA H:ARG290 4.8 20.2 1.0
N H:VAL251 4.8 18.6 1.0
OD1 H:ASP292 4.9 18.3 1.0
CA H:ILE289 4.9 20.5 1.0
CA H:VAL251 5.0 19.0 1.0
O H:VAL251 5.0 20.2 1.0

Potassium binding site 9 out of 12 in 2dcn

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Potassium binding site 9 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K5009

b:21.6
occ:1.00
O I:THR252 2.8 18.0 1.0
O I:ASP250 2.8 18.4 1.0
O I:ASN286 2.8 18.5 1.0
O I:ILE289 3.0 18.8 1.0
O I:HOH5047 3.0 20.0 1.0
O I:GLY291 3.2 17.2 1.0
ND2 I:ASN286 3.2 16.2 1.0
C I:ASN286 3.8 18.2 1.0
C I:GLY291 3.8 17.3 1.0
C I:ASP250 3.9 18.2 1.0
C I:THR252 3.9 18.2 1.0
CG I:ASN286 4.0 19.2 1.0
C I:ILE289 4.1 18.7 1.0
N I:GLY291 4.2 17.1 1.0
CB I:ASP250 4.3 18.8 1.0
CA I:ASP292 4.3 18.2 1.0
N I:THR252 4.4 18.3 1.0
OD2 I:ASP250 4.4 20.0 1.0
N I:ASP292 4.4 17.6 1.0
CG I:ASP250 4.4 20.2 1.0
CA I:VAL287 4.5 18.9 1.0
N I:VAL287 4.5 18.4 1.0
C I:VAL251 4.6 18.4 1.0
CA I:ASP250 4.6 18.7 1.0
CA I:ASN286 4.6 18.2 1.0
CA I:THR252 4.6 18.2 1.0
O I:HOH5037 4.7 18.3 1.0
CA I:GLY291 4.7 16.6 1.0
CB I:ASN286 4.7 18.0 1.0
OD1 I:ASN286 4.7 21.4 1.0
OD1 I:ASP292 4.7 19.4 1.0
C I:ARG290 4.7 17.1 1.0
N I:VAL251 4.8 18.2 1.0
CA I:ARG290 4.8 17.2 1.0
CG1 I:ILE289 4.9 19.5 1.0
N I:ILE289 4.9 19.4 1.0
C I:VAL287 4.9 19.4 1.0
N I:ARG290 4.9 18.1 1.0
CA I:VAL251 4.9 17.9 1.0
N I:GLY253 5.0 18.4 1.0
O I:VAL251 5.0 19.6 1.0
CB I:THR252 5.0 18.8 1.0

Potassium binding site 10 out of 12 in 2dcn

Go back to Potassium Binding Sites List in 2dcn
Potassium binding site 10 out of 12 in the Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate (Alpha-Furanose Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:K5010

b:20.2
occ:1.00
O J:ASP250 2.8 18.6 1.0
O J:ASN286 2.8 21.8 1.0
O J:ILE289 2.8 20.2 1.0
O J:THR252 2.9 19.9 1.0
O J:HOH5021 3.0 16.3 1.0
O J:GLY291 3.1 20.9 1.0
ND2 J:ASN286 3.2 20.0 1.0
C J:ASN286 3.8 21.5 1.0
C J:GLY291 3.8 20.4 1.0
C J:ASP250 3.8 19.3 1.0
C J:ILE289 3.9 20.3 1.0
C J:THR252 4.1 19.6 1.0
CG J:ASN286 4.1 22.9 1.0
CB J:ASP250 4.2 19.3 1.0
N J:GLY291 4.2 20.1 1.0
CA J:ASP292 4.4 20.2 1.0
OD2 J:ASP250 4.4 18.2 1.0
CG J:ASP250 4.4 19.7 1.0
N J:ASP292 4.4 20.1 1.0
N J:THR252 4.5 19.5 1.0
CA J:ASP250 4.6 19.6 1.0
CA J:VAL287 4.6 19.6 1.0
C J:VAL251 4.6 19.2 1.0
CA J:ASN286 4.6 22.2 1.0
OD1 J:ASP292 4.6 19.6 1.0
N J:VAL287 4.6 20.6 1.0
CA J:GLY291 4.7 20.2 1.0
CG2 J:ILE289 4.7 21.0 1.0
O J:HOH5112 4.7 20.8 1.0
C J:ARG290 4.7 19.9 1.0
CB J:ASN286 4.7 21.4 1.0
CA J:ARG290 4.7 19.4 1.0
OD1 J:ASN286 4.8 25.3 1.0
N J:ARG290 4.8 19.9 1.0
N J:ILE289 4.8 20.6 1.0
N J:VAL251 4.8 19.3 1.0
CA J:ILE289 4.8 20.6 1.0
CA J:THR252 4.8 19.4 1.0
C J:VAL287 4.9 19.8 1.0
CA J:VAL251 5.0 18.9 1.0
O J:VAL287 5.0 19.4 1.0

Reference:

S.Okazaki, H.Onda, A.Suzuki, S.Kuramitsu, R.Masui, T.Yamane. Crystal Structure of 2-Keto-3-Deoxygluconate Kinase From Sulfolobus Tokodaii Complexed with 2-Keto-6-Phosphogluconate To Be Published.
Page generated: Sun Dec 13 23:09:28 2020

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