Atomistry » Potassium » PDB 2c44-2frz » 2c7e
Atomistry »
  Potassium »
    PDB 2c44-2frz »
      2c7e »

Potassium in PDB 2c7e: Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)

Other elements in 2c7e:

The structure of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) (pdb code 2c7e). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047), PDB code: 2c7e:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 1 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K549

b:40.8
occ:1.00
 O A:LYS51 2.5 43.2 1.0
O A:HOH2003 2.5 37.3 1.0
O A:HOH2001 2.6 32.5 1.0
O A:THR30 2.6 33.6 1.0
O1A A:ATP551 2.6 37.3 1.0
O A:HOH2004 2.8 50.1 1.0
O A:HOH2002 2.8 61.9 1.0
C A:THR30 3.7 32.9 1.0
PA A:ATP551 3.8 36.6 1.0
C A:LYS51 3.8 42.3 1.0
O2A A:ATP551 4.1 36.8 1.0
OG1 A:THR30 4.1 30.6 1.0
CB A:THR30 4.2 31.7 1.0
O3A A:ATP551 4.4 36.9 1.0
CB A:LYS51 4.5 42.3 1.0
N A:GLY32 4.6 30.2 1.0
O1G A:ATP551 4.6 41.0 1.0
CA A:THR30 4.6 30.9 1.0
CA A:LEU31 4.6 30.1 1.0
N A:LEU31 4.6 30.4 1.0
N A:ASP52 4.7 44.1 1.0
CA A:LYS51 4.7 41.5 1.0
O3G A:ATP551 4.7 42.2 1.0
CA A:ASP52 4.7 45.5 1.0
O A:GLY32 4.7 34.3 1.0
N A:GLY53 4.9 42.9 1.0
C A:LEU31 5.0 30.1 1.0
O5' A:ATP551 5.0 35.1 1.0

Potassium binding site 2 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 2 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K549

b:40.8
occ:1.00
 O B:LYS51 2.5 43.2 1.0
O A:HOH2009 2.5 37.3 1.0
O A:HOH2007 2.6 32.5 1.0
O B:THR30 2.6 33.6 1.0
O1A B:ATP551 2.6 37.3 1.0
O A:HOH2010 2.8 50.1 1.0
O A:HOH2008 2.8 61.9 1.0
C B:THR30 3.7 32.9 1.0
PA B:ATP551 3.8 36.6 1.0
C B:LYS51 3.8 42.3 1.0
O2A B:ATP551 4.1 36.8 1.0
OG1 B:THR30 4.1 30.6 1.0
CB B:THR30 4.2 31.7 1.0
O3A B:ATP551 4.4 36.9 1.0
CB B:LYS51 4.5 42.3 1.0
N B:GLY32 4.6 30.2 1.0
O1G B:ATP551 4.6 41.0 1.0
CA B:THR30 4.6 30.9 1.0
CA B:LEU31 4.6 30.1 1.0
N B:LEU31 4.6 30.4 1.0
N B:ASP52 4.7 44.1 1.0
CA B:LYS51 4.7 41.5 1.0
O3G B:ATP551 4.7 42.2 1.0
CA B:ASP52 4.7 45.5 1.0
O B:GLY32 4.7 34.3 1.0
N B:GLY53 4.9 42.9 1.0
C B:LEU31 5.0 30.1 1.0
O5' B:ATP551 5.0 35.1 1.0

Potassium binding site 3 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 3 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K549

b:40.8
occ:1.00
 O C:LYS51 2.5 43.2 1.0
O A:HOH2015 2.5 37.3 1.0
O A:HOH2013 2.6 32.5 1.0
O C:THR30 2.6 33.6 1.0
O1A C:ATP551 2.6 37.3 1.0
O A:HOH2016 2.8 50.1 1.0
O A:HOH2014 2.8 61.9 1.0
C C:THR30 3.7 32.9 1.0
PA C:ATP551 3.8 36.6 1.0
C C:LYS51 3.8 42.3 1.0
O2A C:ATP551 4.1 36.8 1.0
OG1 C:THR30 4.1 30.6 1.0
CB C:THR30 4.2 31.7 1.0
O3A C:ATP551 4.4 36.9 1.0
CB C:LYS51 4.5 42.3 1.0
N C:GLY32 4.6 30.2 1.0
O1G C:ATP551 4.6 41.0 1.0
CA C:THR30 4.6 30.9 1.0
CA C:LEU31 4.6 30.1 1.0
N C:LEU31 4.6 30.4 1.0
N C:ASP52 4.7 44.1 1.0
CA C:LYS51 4.7 41.5 1.0
O3G C:ATP551 4.7 42.2 1.0
CA C:ASP52 4.7 45.5 1.0
O C:GLY32 4.7 34.3 1.0
N C:GLY53 4.9 42.9 1.0
C C:LEU31 5.0 30.1 1.0
O5' C:ATP551 5.0 35.1 1.0

Potassium binding site 4 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 4 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K549

b:40.8
occ:1.00
 O D:LYS51 2.5 43.2 1.0
O A:HOH2021 2.5 37.3 1.0
O A:HOH2019 2.6 32.5 1.0
O D:THR30 2.6 33.6 1.0
O1A D:ATP551 2.6 37.3 1.0
O A:HOH2022 2.8 50.1 1.0
O A:HOH2020 2.8 61.9 1.0
C D:THR30 3.7 32.9 1.0
PA D:ATP551 3.8 36.6 1.0
C D:LYS51 3.8 42.3 1.0
O2A D:ATP551 4.1 36.8 1.0
OG1 D:THR30 4.1 30.6 1.0
CB D:THR30 4.2 31.7 1.0
O3A D:ATP551 4.4 36.9 1.0
CB D:LYS51 4.5 42.3 1.0
N D:GLY32 4.6 30.2 1.0
O1G D:ATP551 4.6 41.0 1.0
CA D:THR30 4.6 30.9 1.0
CA D:LEU31 4.6 30.1 1.0
N D:LEU31 4.6 30.4 1.0
N D:ASP52 4.7 44.1 1.0
CA D:LYS51 4.7 41.5 1.0
O3G D:ATP551 4.7 42.2 1.0
CA D:ASP52 4.7 45.5 1.0
O D:GLY32 4.7 34.3 1.0
N D:GLY53 4.9 42.9 1.0
C D:LEU31 5.0 30.1 1.0
O5' D:ATP551 5.0 35.1 1.0

Potassium binding site 5 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 5 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K549

b:40.8
occ:1.00
 O E:LYS51 2.5 43.2 1.0
O A:HOH2027 2.5 37.3 1.0
O A:HOH2025 2.6 32.5 1.0
O E:THR30 2.6 33.6 1.0
O1A E:ATP551 2.6 37.3 1.0
O A:HOH2028 2.8 50.1 1.0
O A:HOH2026 2.8 61.9 1.0
C E:THR30 3.7 32.9 1.0
PA E:ATP551 3.8 36.6 1.0
C E:LYS51 3.8 42.3 1.0
O2A E:ATP551 4.1 36.8 1.0
OG1 E:THR30 4.1 30.6 1.0
CB E:THR30 4.2 31.7 1.0
O3A E:ATP551 4.4 36.9 1.0
CB E:LYS51 4.5 42.3 1.0
N E:GLY32 4.6 30.2 1.0
O1G E:ATP551 4.6 41.0 1.0
CA E:THR30 4.6 30.9 1.0
CA E:LEU31 4.6 30.1 1.0
N E:LEU31 4.6 30.4 1.0
N E:ASP52 4.7 44.1 1.0
CA E:LYS51 4.7 41.5 1.0
O3G E:ATP551 4.7 42.2 1.0
CA E:ASP52 4.7 45.5 1.0
O E:GLY32 4.7 34.3 1.0
N E:GLY53 4.9 42.9 1.0
C E:LEU31 5.0 30.1 1.0
O5' E:ATP551 5.0 35.1 1.0

Potassium binding site 6 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 6 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K549

b:40.8
occ:1.00
 O F:LYS51 2.5 43.2 1.0
O A:HOH2033 2.5 37.3 1.0
O A:HOH2031 2.6 32.5 1.0
O F:THR30 2.6 33.6 1.0
O1A F:ATP551 2.6 37.3 1.0
O A:HOH2034 2.8 50.1 1.0
O A:HOH2032 2.8 61.9 1.0
C F:THR30 3.7 32.9 1.0
PA F:ATP551 3.8 36.6 1.0
C F:LYS51 3.8 42.3 1.0
O2A F:ATP551 4.1 36.8 1.0
OG1 F:THR30 4.1 30.6 1.0
CB F:THR30 4.2 31.7 1.0
O3A F:ATP551 4.4 36.9 1.0
CB F:LYS51 4.5 42.3 1.0
N F:GLY32 4.6 30.2 1.0
O1G F:ATP551 4.6 41.0 1.0
CA F:THR30 4.6 30.9 1.0
CA F:LEU31 4.6 30.1 1.0
N F:LEU31 4.6 30.4 1.0
N F:ASP52 4.7 44.1 1.0
CA F:LYS51 4.7 41.5 1.0
O3G F:ATP551 4.7 42.2 1.0
CA F:ASP52 4.7 45.5 1.0
O F:GLY32 4.7 34.3 1.0
N F:GLY53 4.9 42.9 1.0
C F:LEU31 5.0 30.1 1.0
O5' F:ATP551 5.0 35.1 1.0

Potassium binding site 7 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 7 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K549

b:40.8
occ:1.00
 O G:LYS51 2.5 43.2 1.0
O A:HOH2039 2.5 37.3 1.0
O A:HOH2037 2.6 32.5 1.0
O G:THR30 2.6 33.6 1.0
O1A G:ATP551 2.6 37.3 1.0
O A:HOH2040 2.8 50.1 1.0
O A:HOH2038 2.8 61.9 1.0
C G:THR30 3.7 32.9 1.0
PA G:ATP551 3.8 36.6 1.0
C G:LYS51 3.8 42.3 1.0
O2A G:ATP551 4.1 36.8 1.0
OG1 G:THR30 4.1 30.6 1.0
CB G:THR30 4.2 31.7 1.0
O3A G:ATP551 4.4 36.9 1.0
CB G:LYS51 4.5 42.3 1.0
N G:GLY32 4.6 30.2 1.0
O1G G:ATP551 4.6 41.0 1.0
CA G:THR30 4.6 30.9 1.0
CA G:LEU31 4.6 30.1 1.0
N G:LEU31 4.6 30.4 1.0
N G:ASP52 4.7 44.1 1.0
CA G:LYS51 4.7 41.5 1.0
O3G G:ATP551 4.7 42.2 1.0
CA G:ASP52 4.7 45.5 1.0
O G:GLY32 4.7 34.3 1.0
N G:GLY53 4.9 42.9 1.0
C G:LEU31 5.0 30.1 1.0
O5' G:ATP551 5.0 35.1 1.0

Reference:

N.A.Ranson, G.W.Farr, A.M.Roseman, B.Gowen, W.A.Fenton, A.L.Horwich, H.R.Saibil. Atp-Bound States of Groel Captured By Cryo-Electron Microscopy Cell(Cambridge,Mass.) V. 107 869 2001.
ISSN: ISSN 0092-8674
PubMed: 11779463
DOI: 10.1016/S0092-8674(01)00617-1
Page generated: Mon Aug 12 06:09:44 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy