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Potassium in PDB 2c7e: Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)

Other elements in 2c7e:

The structure of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) (pdb code 2c7e). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047), PDB code: 2c7e:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7;

Potassium binding site 1 out of 7 in 2c7e

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Potassium binding site 1 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K549

b:40.8
occ:1.00
 O A:LYS51 2.5 43.2 1.0
O A:HOH2003 2.5 37.3 1.0
O A:HOH2001 2.6 32.5 1.0
O A:THR30 2.6 33.6 1.0
O1A A:ATP551 2.6 37.3 1.0
O A:HOH2004 2.8 50.1 1.0
O A:HOH2002 2.8 61.9 1.0
C A:THR30 3.7 32.9 1.0
PA A:ATP551 3.8 36.6 1.0
C A:LYS51 3.8 42.3 1.0
O2A A:ATP551 4.1 36.8 1.0
OG1 A:THR30 4.1 30.6 1.0
CB A:THR30 4.2 31.7 1.0
O3A A:ATP551 4.4 36.9 1.0
CB A:LYS51 4.5 42.3 1.0
N A:GLY32 4.6 30.2 1.0
O1G A:ATP551 4.6 41.0 1.0
CA A:THR30 4.6 30.9 1.0
CA A:LEU31 4.6 30.1 1.0
N A:LEU31 4.6 30.4 1.0
N A:ASP52 4.7 44.1 1.0
CA A:LYS51 4.7 41.5 1.0
O3G A:ATP551 4.7 42.2 1.0
CA A:ASP52 4.7 45.5 1.0
O A:GLY32 4.7 34.3 1.0
N A:GLY53 4.9 42.9 1.0
C A:LEU31 5.0 30.1 1.0
O5' A:ATP551 5.0 35.1 1.0

Potassium binding site 2 out of 7 in 2c7e

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Potassium binding site 2 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K549

b:40.8
occ:1.00
 O B:LYS51 2.5 43.2 1.0
O A:HOH2009 2.5 37.3 1.0
O A:HOH2007 2.6 32.5 1.0
O B:THR30 2.6 33.6 1.0
O1A B:ATP551 2.6 37.3 1.0
O A:HOH2010 2.8 50.1 1.0
O A:HOH2008 2.8 61.9 1.0
C B:THR30 3.7 32.9 1.0
PA B:ATP551 3.8 36.6 1.0
C B:LYS51 3.8 42.3 1.0
O2A B:ATP551 4.1 36.8 1.0
OG1 B:THR30 4.1 30.6 1.0
CB B:THR30 4.2 31.7 1.0
O3A B:ATP551 4.4 36.9 1.0
CB B:LYS51 4.5 42.3 1.0
N B:GLY32 4.6 30.2 1.0
O1G B:ATP551 4.6 41.0 1.0
CA B:THR30 4.6 30.9 1.0
CA B:LEU31 4.6 30.1 1.0
N B:LEU31 4.6 30.4 1.0
N B:ASP52 4.7 44.1 1.0
CA B:LYS51 4.7 41.5 1.0
O3G B:ATP551 4.7 42.2 1.0
CA B:ASP52 4.7 45.5 1.0
O B:GLY32 4.7 34.3 1.0
N B:GLY53 4.9 42.9 1.0
C B:LEU31 5.0 30.1 1.0
O5' B:ATP551 5.0 35.1 1.0

Potassium binding site 3 out of 7 in 2c7e

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Potassium binding site 3 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K549

b:40.8
occ:1.00
 O C:LYS51 2.5 43.2 1.0
O A:HOH2015 2.5 37.3 1.0
O A:HOH2013 2.6 32.5 1.0
O C:THR30 2.6 33.6 1.0
O1A C:ATP551 2.6 37.3 1.0
O A:HOH2016 2.8 50.1 1.0
O A:HOH2014 2.8 61.9 1.0
C C:THR30 3.7 32.9 1.0
PA C:ATP551 3.8 36.6 1.0
C C:LYS51 3.8 42.3 1.0
O2A C:ATP551 4.1 36.8 1.0
OG1 C:THR30 4.1 30.6 1.0
CB C:THR30 4.2 31.7 1.0
O3A C:ATP551 4.4 36.9 1.0
CB C:LYS51 4.5 42.3 1.0
N C:GLY32 4.6 30.2 1.0
O1G C:ATP551 4.6 41.0 1.0
CA C:THR30 4.6 30.9 1.0
CA C:LEU31 4.6 30.1 1.0
N C:LEU31 4.6 30.4 1.0
N C:ASP52 4.7 44.1 1.0
CA C:LYS51 4.7 41.5 1.0
O3G C:ATP551 4.7 42.2 1.0
CA C:ASP52 4.7 45.5 1.0
O C:GLY32 4.7 34.3 1.0
N C:GLY53 4.9 42.9 1.0
C C:LEU31 5.0 30.1 1.0
O5' C:ATP551 5.0 35.1 1.0

Potassium binding site 4 out of 7 in 2c7e

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Potassium binding site 4 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K549

b:40.8
occ:1.00
 O D:LYS51 2.5 43.2 1.0
O A:HOH2021 2.5 37.3 1.0
O A:HOH2019 2.6 32.5 1.0
O D:THR30 2.6 33.6 1.0
O1A D:ATP551 2.6 37.3 1.0
O A:HOH2022 2.8 50.1 1.0
O A:HOH2020 2.8 61.9 1.0
C D:THR30 3.7 32.9 1.0
PA D:ATP551 3.8 36.6 1.0
C D:LYS51 3.8 42.3 1.0
O2A D:ATP551 4.1 36.8 1.0
OG1 D:THR30 4.1 30.6 1.0
CB D:THR30 4.2 31.7 1.0
O3A D:ATP551 4.4 36.9 1.0
CB D:LYS51 4.5 42.3 1.0
N D:GLY32 4.6 30.2 1.0
O1G D:ATP551 4.6 41.0 1.0
CA D:THR30 4.6 30.9 1.0
CA D:LEU31 4.6 30.1 1.0
N D:LEU31 4.6 30.4 1.0
N D:ASP52 4.7 44.1 1.0
CA D:LYS51 4.7 41.5 1.0
O3G D:ATP551 4.7 42.2 1.0
CA D:ASP52 4.7 45.5 1.0
O D:GLY32 4.7 34.3 1.0
N D:GLY53 4.9 42.9 1.0
C D:LEU31 5.0 30.1 1.0
O5' D:ATP551 5.0 35.1 1.0

Potassium binding site 5 out of 7 in 2c7e

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Potassium binding site 5 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K549

b:40.8
occ:1.00
 O E:LYS51 2.5 43.2 1.0
O A:HOH2027 2.5 37.3 1.0
O A:HOH2025 2.6 32.5 1.0
O E:THR30 2.6 33.6 1.0
O1A E:ATP551 2.6 37.3 1.0
O A:HOH2028 2.8 50.1 1.0
O A:HOH2026 2.8 61.9 1.0
C E:THR30 3.7 32.9 1.0
PA E:ATP551 3.8 36.6 1.0
C E:LYS51 3.8 42.3 1.0
O2A E:ATP551 4.1 36.8 1.0
OG1 E:THR30 4.1 30.6 1.0
CB E:THR30 4.2 31.7 1.0
O3A E:ATP551 4.4 36.9 1.0
CB E:LYS51 4.5 42.3 1.0
N E:GLY32 4.6 30.2 1.0
O1G E:ATP551 4.6 41.0 1.0
CA E:THR30 4.6 30.9 1.0
CA E:LEU31 4.6 30.1 1.0
N E:LEU31 4.6 30.4 1.0
N E:ASP52 4.7 44.1 1.0
CA E:LYS51 4.7 41.5 1.0
O3G E:ATP551 4.7 42.2 1.0
CA E:ASP52 4.7 45.5 1.0
O E:GLY32 4.7 34.3 1.0
N E:GLY53 4.9 42.9 1.0
C E:LEU31 5.0 30.1 1.0
O5' E:ATP551 5.0 35.1 1.0

Potassium binding site 6 out of 7 in 2c7e

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Potassium binding site 6 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K549

b:40.8
occ:1.00
 O F:LYS51 2.5 43.2 1.0
O A:HOH2033 2.5 37.3 1.0
O A:HOH2031 2.6 32.5 1.0
O F:THR30 2.6 33.6 1.0
O1A F:ATP551 2.6 37.3 1.0
O A:HOH2034 2.8 50.1 1.0
O A:HOH2032 2.8 61.9 1.0
C F:THR30 3.7 32.9 1.0
PA F:ATP551 3.8 36.6 1.0
C F:LYS51 3.8 42.3 1.0
O2A F:ATP551 4.1 36.8 1.0
OG1 F:THR30 4.1 30.6 1.0
CB F:THR30 4.2 31.7 1.0
O3A F:ATP551 4.4 36.9 1.0
CB F:LYS51 4.5 42.3 1.0
N F:GLY32 4.6 30.2 1.0
O1G F:ATP551 4.6 41.0 1.0
CA F:THR30 4.6 30.9 1.0
CA F:LEU31 4.6 30.1 1.0
N F:LEU31 4.6 30.4 1.0
N F:ASP52 4.7 44.1 1.0
CA F:LYS51 4.7 41.5 1.0
O3G F:ATP551 4.7 42.2 1.0
CA F:ASP52 4.7 45.5 1.0
O F:GLY32 4.7 34.3 1.0
N F:GLY53 4.9 42.9 1.0
C F:LEU31 5.0 30.1 1.0
O5' F:ATP551 5.0 35.1 1.0

Potassium binding site 7 out of 7 in 2c7e

Go back to Potassium Binding Sites List in 2c7e
Potassium binding site 7 out of 7 in the Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Revised Atomic Structure Fitting Into A Groel(D398A)-ATP7 Cryo-Em Map (Emd 1047) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K549

b:40.8
occ:1.00
 O G:LYS51 2.5 43.2 1.0
O A:HOH2039 2.5 37.3 1.0
O A:HOH2037 2.6 32.5 1.0
O G:THR30 2.6 33.6 1.0
O1A G:ATP551 2.6 37.3 1.0
O A:HOH2040 2.8 50.1 1.0
O A:HOH2038 2.8 61.9 1.0
C G:THR30 3.7 32.9 1.0
PA G:ATP551 3.8 36.6 1.0
C G:LYS51 3.8 42.3 1.0
O2A G:ATP551 4.1 36.8 1.0
OG1 G:THR30 4.1 30.6 1.0
CB G:THR30 4.2 31.7 1.0
O3A G:ATP551 4.4 36.9 1.0
CB G:LYS51 4.5 42.3 1.0
N G:GLY32 4.6 30.2 1.0
O1G G:ATP551 4.6 41.0 1.0
CA G:THR30 4.6 30.9 1.0
CA G:LEU31 4.6 30.1 1.0
N G:LEU31 4.6 30.4 1.0
N G:ASP52 4.7 44.1 1.0
CA G:LYS51 4.7 41.5 1.0
O3G G:ATP551 4.7 42.2 1.0
CA G:ASP52 4.7 45.5 1.0
O G:GLY32 4.7 34.3 1.0
N G:GLY53 4.9 42.9 1.0
C G:LEU31 5.0 30.1 1.0
O5' G:ATP551 5.0 35.1 1.0

Reference:

N.A.Ranson, G.W.Farr, A.M.Roseman, B.Gowen, W.A.Fenton, A.L.Horwich, H.R.Saibil. Atp-Bound States of Groel Captured By Cryo-Electron Microscopy Cell(Cambridge,Mass.) V. 107 869 2001.
ISSN: ISSN 0092-8674
PubMed: 11779463
DOI: 10.1016/S0092-8674(01)00617-1
Page generated: Mon Aug 12 06:09:44 2024

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