Potassium in PDB 2bwg: Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
Enzymatic activity of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
All present enzymatic activity of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp:
1.7.1.7;
Protein crystallography data
The structure of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp, PDB code: 2bwg
was solved by
G.Bunkoczi,
A.Haroniti,
S.Ng,
F.Von Delft,
O.Gileadi,
U.Oppermann,
C.Arrowsmith,
A.Edwards,
M.Sundstrom,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
40.00 /
2.40
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
55.312,
114.418,
115.129,
90.00,
102.74,
90.00
|
R / Rfree (%)
|
19.6 /
24.5
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
(pdb code 2bwg). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the
Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp, PDB code: 2bwg:
Jump to Potassium binding site number:
1;
2;
3;
4;
Potassium binding site 1 out
of 4 in 2bwg
Go back to
Potassium Binding Sites List in 2bwg
Potassium binding site 1 out
of 4 in the Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K1339
b:24.3
occ:1.00
|
O
|
A:GLY181
|
2.5
|
19.8
|
1.0
|
O
|
A:GLY183
|
2.8
|
11.9
|
1.0
|
O
|
A:CYS186
|
3.1
|
16.9
|
1.0
|
O
|
A:HOH2036
|
3.2
|
18.3
|
1.0
|
NH2
|
A:ARG189
|
3.2
|
26.4
|
1.0
|
C
|
A:GLY181
|
3.7
|
20.0
|
1.0
|
CZ
|
A:ARG189
|
3.7
|
30.0
|
1.0
|
C
|
A:PRO182
|
3.7
|
18.5
|
1.0
|
O
|
A:PRO182
|
3.8
|
19.9
|
1.0
|
C
|
A:GLY183
|
3.8
|
13.8
|
1.0
|
C
|
A:CYS186
|
3.9
|
14.2
|
1.0
|
N
|
A:GLY183
|
4.0
|
16.5
|
1.0
|
O
|
A:HOH2012
|
4.1
|
19.8
|
1.0
|
CA
|
A:PRO182
|
4.1
|
18.8
|
1.0
|
CB
|
A:CYS186
|
4.1
|
12.3
|
1.0
|
NE
|
A:ARG189
|
4.1
|
30.1
|
1.0
|
NH1
|
A:ARG189
|
4.3
|
28.6
|
1.0
|
N
|
A:PRO182
|
4.3
|
19.4
|
1.0
|
CA
|
A:CYS186
|
4.3
|
12.9
|
1.0
|
N
|
A:CYS186
|
4.4
|
13.4
|
1.0
|
CA
|
A:GLY183
|
4.4
|
16.1
|
1.0
|
O
|
A:SER184
|
4.5
|
12.7
|
1.0
|
SG
|
A:CYS186
|
4.7
|
15.3
|
1.0
|
C
|
A:SER184
|
4.7
|
13.7
|
1.0
|
N
|
A:SER184
|
4.8
|
14.8
|
1.0
|
CA
|
A:GLY181
|
4.8
|
20.0
|
1.0
|
N
|
A:THR187
|
4.9
|
13.3
|
1.0
|
CA
|
A:SER184
|
4.9
|
14.4
|
1.0
|
|
Potassium binding site 2 out
of 4 in 2bwg
Go back to
Potassium Binding Sites List in 2bwg
Potassium binding site 2 out
of 4 in the Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K1338
b:26.2
occ:1.00
|
O
|
B:GLY183
|
2.8
|
12.0
|
1.0
|
O
|
B:CYS186
|
2.8
|
17.0
|
1.0
|
O
|
B:GLY181
|
3.0
|
19.4
|
1.0
|
O
|
B:HOH2027
|
3.5
|
11.8
|
1.0
|
C
|
B:CYS186
|
3.8
|
14.3
|
1.0
|
O
|
B:HOH2011
|
3.8
|
11.4
|
1.0
|
C
|
B:GLY183
|
3.9
|
13.9
|
1.0
|
NH2
|
B:ARG189
|
4.1
|
26.8
|
1.0
|
O
|
B:PRO182
|
4.1
|
19.3
|
1.0
|
C
|
B:PRO182
|
4.1
|
18.3
|
1.0
|
O
|
B:SER184
|
4.2
|
12.5
|
1.0
|
C
|
B:GLY181
|
4.2
|
20.2
|
1.0
|
CB
|
B:CYS186
|
4.4
|
13.3
|
1.0
|
N
|
B:CYS186
|
4.4
|
13.2
|
1.0
|
N
|
B:GLY183
|
4.4
|
16.5
|
1.0
|
CA
|
B:CYS186
|
4.4
|
12.7
|
1.0
|
C
|
B:SER184
|
4.5
|
13.8
|
1.0
|
CZ
|
B:ARG189
|
4.6
|
28.0
|
1.0
|
CA
|
B:PRO182
|
4.6
|
18.7
|
1.0
|
CA
|
B:GLY183
|
4.7
|
16.4
|
1.0
|
N
|
B:SER184
|
4.8
|
14.3
|
1.0
|
CA
|
B:SER184
|
4.8
|
14.4
|
1.0
|
N
|
B:THR187
|
4.8
|
13.6
|
1.0
|
NE
|
B:ARG189
|
4.8
|
25.6
|
1.0
|
N
|
B:PRO182
|
4.9
|
19.4
|
1.0
|
|
Potassium binding site 3 out
of 4 in 2bwg
Go back to
Potassium Binding Sites List in 2bwg
Potassium binding site 3 out
of 4 in the Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K1338
b:31.2
occ:1.00
|
O
|
C:CYS186
|
2.8
|
16.8
|
1.0
|
O
|
C:GLY183
|
2.8
|
12.3
|
1.0
|
O
|
C:GLY181
|
2.9
|
19.9
|
1.0
|
NH2
|
C:ARG189
|
3.5
|
26.5
|
1.0
|
O
|
C:HOH2034
|
3.8
|
13.8
|
1.0
|
C
|
C:CYS186
|
3.8
|
14.1
|
1.0
|
C
|
C:GLY183
|
4.0
|
14.0
|
1.0
|
O
|
C:PRO182
|
4.0
|
19.6
|
1.0
|
C
|
C:PRO182
|
4.1
|
18.6
|
1.0
|
CZ
|
C:ARG189
|
4.2
|
27.5
|
1.0
|
C
|
C:GLY181
|
4.2
|
20.2
|
1.0
|
O
|
C:SER184
|
4.2
|
12.8
|
1.0
|
CB
|
C:CYS186
|
4.4
|
13.7
|
1.0
|
N
|
C:GLY183
|
4.4
|
16.9
|
1.0
|
N
|
C:CYS186
|
4.4
|
13.8
|
1.0
|
CA
|
C:CYS186
|
4.5
|
13.0
|
1.0
|
C
|
C:SER184
|
4.5
|
13.8
|
1.0
|
CA
|
C:PRO182
|
4.6
|
19.0
|
1.0
|
NE
|
C:ARG189
|
4.7
|
26.7
|
1.0
|
NH1
|
C:ARG189
|
4.7
|
31.3
|
1.0
|
CA
|
C:GLY183
|
4.8
|
15.8
|
1.0
|
SG
|
C:CYS186
|
4.8
|
18.6
|
1.0
|
N
|
C:THR187
|
4.8
|
13.8
|
1.0
|
N
|
C:SER184
|
4.8
|
14.7
|
1.0
|
N
|
C:PRO182
|
4.8
|
19.3
|
1.0
|
CA
|
C:SER184
|
4.9
|
14.4
|
1.0
|
|
Potassium binding site 4 out
of 4 in 2bwg
Go back to
Potassium Binding Sites List in 2bwg
Potassium binding site 4 out
of 4 in the Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K1338
b:22.1
occ:1.00
|
O
|
D:GLY183
|
2.8
|
11.9
|
1.0
|
O
|
D:GLY181
|
2.8
|
19.9
|
1.0
|
O
|
D:CYS186
|
3.0
|
16.8
|
1.0
|
NH2
|
D:ARG189
|
3.5
|
30.2
|
1.0
|
O
|
D:HOH2011
|
3.6
|
24.3
|
1.0
|
O
|
D:HOH2026
|
3.7
|
14.1
|
1.0
|
C
|
D:GLY183
|
3.8
|
13.9
|
1.0
|
C
|
D:CYS186
|
3.9
|
14.3
|
1.0
|
C
|
D:PRO182
|
4.0
|
18.4
|
1.0
|
C
|
D:GLY181
|
4.0
|
20.2
|
1.0
|
O
|
D:PRO182
|
4.0
|
19.4
|
1.0
|
CZ
|
D:ARG189
|
4.1
|
28.4
|
1.0
|
N
|
D:GLY183
|
4.2
|
16.7
|
1.0
|
O
|
D:SER184
|
4.3
|
12.9
|
1.0
|
CB
|
D:CYS186
|
4.4
|
13.1
|
1.0
|
CA
|
D:PRO182
|
4.4
|
18.9
|
1.0
|
N
|
D:CYS186
|
4.5
|
13.4
|
1.0
|
CA
|
D:CYS186
|
4.5
|
12.9
|
1.0
|
C
|
D:SER184
|
4.6
|
13.7
|
1.0
|
CA
|
D:GLY183
|
4.6
|
16.1
|
1.0
|
N
|
D:PRO182
|
4.7
|
19.4
|
1.0
|
NE
|
D:ARG189
|
4.7
|
27.0
|
1.0
|
NH1
|
D:ARG189
|
4.7
|
29.3
|
1.0
|
N
|
D:SER184
|
4.7
|
14.5
|
1.0
|
CA
|
D:SER184
|
4.8
|
14.4
|
1.0
|
N
|
D:THR187
|
4.9
|
13.6
|
1.0
|
SG
|
D:CYS186
|
4.9
|
15.2
|
1.0
|
|
Reference:
G.Bunkoczi,
A.Haroniti,
S.Ng,
F.Von Delft,
O.Gileadi,
U.Oppermann,
C.Arrowsmith,
A.Edwards,
M.Sundstrom.
Structure of Human Guanosine Monophosphate Reductase GMPR1 in Complex with Gmp To Be Published.
Page generated: Mon Aug 12 06:08:49 2024
|