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Potassium in PDB 2a2o: Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution, PDB code: 2a2o was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.85 / 2.16
Space group P 63 2 2
Cell size a, b, c (Å), α, β, γ (°) 201.238, 201.238, 291.030, 90.00, 90.00, 120.00
R / Rfree (%) 14.5 / 17.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution (pdb code 2a2o). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution, PDB code: 2a2o:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 2a2o

Go back to Potassium Binding Sites List in 2a2o
Potassium binding site 1 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K247

b:81.8
occ:1.00
NE2 B:GLN208 3.5 46.7 1.0
OE1 B:GLN208 3.5 47.8 1.0
O B:ARG24 3.7 41.1 1.0
OG1 B:THR27 3.9 42.9 1.0
CD B:GLN208 4.0 47.2 1.0
N B:LEU28 4.2 39.3 1.0
CA B:LEU28 4.3 38.5 1.0
CB B:LEU28 4.3 39.4 1.0
CE B:MSE205 4.5 58.1 1.0
C B:THR27 4.6 40.5 1.0
CD1 B:LEU28 4.7 41.8 1.0
CG2 B:THR101 4.7 37.3 1.0
SE B:MSE205 4.8 54.5 0.7
C B:ARG24 4.8 40.9 1.0
CA B:LEU25 4.8 38.8 1.0

Potassium binding site 2 out of 8 in 2a2o

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Potassium binding site 2 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K248

b:82.4
occ:1.00
OG B:SER130 3.3 45.0 1.0
OE2 B:GLU128 3.3 61.0 1.0
OE2 A:GLU128 3.5 61.3 1.0
OG A:SER130 3.8 42.6 1.0
N B:GLY131 3.9 39.5 1.0
CA A:GLY131 3.9 39.0 1.0
CA B:GLY131 3.9 39.0 1.0
N A:GLY131 4.1 39.3 1.0
C B:SER130 4.1 40.1 1.0
CD B:GLU128 4.2 57.5 1.0
O A:SER130 4.2 41.8 1.0
O B:SER130 4.2 42.2 1.0
C A:SER130 4.2 40.2 1.0
CG B:GLU128 4.3 41.7 1.0
CB B:SER130 4.4 39.2 1.0
CD A:GLU128 4.4 58.0 1.0
CB A:SER130 4.7 39.1 1.0
CG A:GLU128 4.8 43.9 1.0
CA B:SER130 4.9 39.3 1.0
O B:HOH475 4.9 68.0 1.0
O B:HOH403 5.0 60.8 1.0

Potassium binding site 3 out of 8 in 2a2o

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Potassium binding site 3 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K247

b:93.7
occ:1.00
O C:HOH484 3.3 63.5 1.0
ND2 C:ASN192 3.3 40.4 1.0
CE3 C:TRP191 4.0 68.0 1.0
O1 C:EDO248 4.0 48.0 1.0
NE1 C:TRP188 4.1 37.9 1.0
CD1 C:TRP188 4.3 40.2 1.0
CG C:ASN192 4.3 40.0 1.0
CZ3 C:TRP168 4.4 42.0 1.0
OH C:TYR116 4.5 53.7 1.0
OD1 C:ASN192 4.6 58.1 1.0
CD C:ARG12 4.6 47.3 1.0
CZ3 C:TRP191 4.7 59.7 1.0
CB C:TRP191 4.7 42.5 1.0
CE2 C:TRP188 4.8 33.2 1.0
C1 C:EDO248 4.8 54.6 1.0
CE3 C:TRP168 4.9 37.6 1.0
OH C:TYR72 4.9 31.1 1.0
CB C:ARG12 4.9 44.0 1.0
SE C:MSE76 5.0 60.4 0.7
CE C:MSE76 5.0 70.8 1.0
CG C:TRP188 5.0 35.5 1.0

Potassium binding site 4 out of 8 in 2a2o

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Potassium binding site 4 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K247

b:85.2
occ:1.00
OE2 D:GLU128 3.1 64.7 1.0
OE2 C:GLU128 3.2 61.9 1.0
OG D:SER130 3.5 42.8 1.0
OG C:SER130 3.6 42.8 1.0
O C:HOH497 3.8 65.7 1.0
CA D:GLY131 3.9 39.2 1.0
N D:GLY131 3.9 39.1 1.0
CA C:GLY131 4.0 39.2 1.0
CD D:GLU128 4.0 58.6 1.0
N C:GLY131 4.1 39.7 1.0
O C:SER130 4.1 42.1 1.0
C D:SER130 4.1 40.4 1.0
C C:SER130 4.1 40.3 1.0
CD C:GLU128 4.2 58.5 1.0
O D:SER130 4.2 41.8 1.0
CG D:GLU128 4.4 42.5 1.0
CB D:SER130 4.5 38.7 1.0
CB C:SER130 4.5 38.3 1.0
CG C:GLU128 4.6 42.0 1.0
O C:HOH513 4.8 70.0 1.0
CA D:SER130 5.0 39.2 1.0
OE1 D:GLU128 5.0 57.9 1.0

Potassium binding site 5 out of 8 in 2a2o

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Potassium binding site 5 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K248

b:96.3
occ:1.00
ND2 D:ASN192 3.5 40.7 1.0
CZ3 D:TRP168 3.9 41.4 1.0
NE1 D:TRP188 3.9 37.9 1.0
O2 D:EDO249 3.9 45.1 1.0
C2 D:EDO249 4.1 55.8 1.0
CE3 D:TRP191 4.2 66.9 1.0
CD1 D:TRP188 4.2 37.7 1.0
OH D:TYR116 4.4 55.4 1.0
CG D:ASN192 4.4 41.4 1.0
OD1 D:ASN192 4.4 56.7 1.0
CD D:ARG12 4.5 49.2 1.0
CE3 D:TRP168 4.5 36.0 1.0
CE2 D:TRP188 4.7 33.4 1.0
CE D:MSE76 4.7 72.2 1.0
SE D:MSE76 4.7 61.7 0.7
CZ3 D:TRP191 4.7 58.7 1.0
OH D:TYR72 4.9 31.8 1.0
CH2 D:TRP168 4.9 43.0 1.0

Potassium binding site 6 out of 8 in 2a2o

Go back to Potassium Binding Sites List in 2a2o
Potassium binding site 6 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K247

b:82.0
occ:1.00
OE2 F:GLU128 3.1 63.3 1.0
OE2 E:GLU128 3.3 64.3 1.0
OG F:SER130 3.6 44.0 1.0
OG E:SER130 3.6 45.5 1.0
CA F:GLY131 3.9 39.0 1.0
N F:GLY131 3.9 39.2 1.0
CA E:GLY131 4.0 39.2 1.0
CD F:GLU128 4.0 57.1 1.0
N E:GLY131 4.0 39.5 1.0
C F:SER130 4.1 40.2 1.0
C E:SER130 4.2 40.3 1.0
CD E:GLU128 4.2 59.5 1.0
O E:SER130 4.2 42.3 1.0
O F:SER130 4.3 42.0 1.0
CG F:GLU128 4.3 41.4 1.0
O F:HOH482 4.3 65.6 1.0
CB E:SER130 4.4 40.7 1.0
CG E:GLU128 4.5 41.7 1.0
CB F:SER130 4.6 39.2 1.0
CA E:SER130 4.9 39.5 1.0
CA F:SER130 5.0 39.2 1.0

Potassium binding site 7 out of 8 in 2a2o

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Potassium binding site 7 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K247

b:92.4
occ:1.00
ND2 F:ASN192 3.5 40.3 1.0
CZ3 F:TRP168 4.0 44.8 1.0
NE1 F:TRP188 4.0 39.9 1.0
C2 F:EDO251 4.1 62.5 1.0
CE3 F:TRP191 4.2 69.3 1.0
O2 F:EDO251 4.2 60.9 1.0
OD1 F:ASN192 4.3 58.7 1.0
CE F:MSE76 4.3 71.1 1.0
CD1 F:TRP188 4.3 39.5 1.0
CG F:ASN192 4.3 42.7 1.0
OH F:TYR116 4.4 58.6 1.0
CE3 F:TRP168 4.6 34.7 1.0
CD F:ARG12 4.6 49.7 1.0
SE F:MSE76 4.6 62.0 0.7
CZ3 F:TRP191 4.7 58.0 1.0
CE2 F:TRP188 4.8 37.2 1.0

Potassium binding site 8 out of 8 in 2a2o

Go back to Potassium Binding Sites List in 2a2o
Potassium binding site 8 out of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K247

b:78.5
occ:0.50
OE2 G:GLU128 3.1 61.4 1.0
OG G:SER130 3.4 45.9 1.0
CA G:GLY131 3.9 39.2 1.0
N G:GLY131 4.0 39.2 1.0
C G:SER130 4.1 39.9 1.0
O G:SER130 4.2 41.7 1.0
CD G:GLU128 4.2 55.7 1.0
CB G:SER130 4.5 37.6 1.0
CG G:GLU128 4.6 41.7 1.0
CA G:SER130 4.9 39.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Mon Aug 12 05:58:55 2024

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