Potassium in PDB 2a2o: Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution, PDB code: 2a2o
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.85 /
2.16
|
Space group
|
P 63 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
201.238,
201.238,
291.030,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
14.5 /
17.3
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
(pdb code 2a2o). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the
Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution, PDB code: 2a2o:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Potassium binding site 1 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 1 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K247
b:81.8
occ:1.00
|
NE2
|
B:GLN208
|
3.5
|
46.7
|
1.0
|
OE1
|
B:GLN208
|
3.5
|
47.8
|
1.0
|
O
|
B:ARG24
|
3.7
|
41.1
|
1.0
|
OG1
|
B:THR27
|
3.9
|
42.9
|
1.0
|
CD
|
B:GLN208
|
4.0
|
47.2
|
1.0
|
N
|
B:LEU28
|
4.2
|
39.3
|
1.0
|
CA
|
B:LEU28
|
4.3
|
38.5
|
1.0
|
CB
|
B:LEU28
|
4.3
|
39.4
|
1.0
|
CE
|
B:MSE205
|
4.5
|
58.1
|
1.0
|
C
|
B:THR27
|
4.6
|
40.5
|
1.0
|
CD1
|
B:LEU28
|
4.7
|
41.8
|
1.0
|
CG2
|
B:THR101
|
4.7
|
37.3
|
1.0
|
SE
|
B:MSE205
|
4.8
|
54.5
|
0.7
|
C
|
B:ARG24
|
4.8
|
40.9
|
1.0
|
CA
|
B:LEU25
|
4.8
|
38.8
|
1.0
|
|
Potassium binding site 2 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 2 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K248
b:82.4
occ:1.00
|
OG
|
B:SER130
|
3.3
|
45.0
|
1.0
|
OE2
|
B:GLU128
|
3.3
|
61.0
|
1.0
|
OE2
|
A:GLU128
|
3.5
|
61.3
|
1.0
|
OG
|
A:SER130
|
3.8
|
42.6
|
1.0
|
N
|
B:GLY131
|
3.9
|
39.5
|
1.0
|
CA
|
A:GLY131
|
3.9
|
39.0
|
1.0
|
CA
|
B:GLY131
|
3.9
|
39.0
|
1.0
|
N
|
A:GLY131
|
4.1
|
39.3
|
1.0
|
C
|
B:SER130
|
4.1
|
40.1
|
1.0
|
CD
|
B:GLU128
|
4.2
|
57.5
|
1.0
|
O
|
A:SER130
|
4.2
|
41.8
|
1.0
|
O
|
B:SER130
|
4.2
|
42.2
|
1.0
|
C
|
A:SER130
|
4.2
|
40.2
|
1.0
|
CG
|
B:GLU128
|
4.3
|
41.7
|
1.0
|
CB
|
B:SER130
|
4.4
|
39.2
|
1.0
|
CD
|
A:GLU128
|
4.4
|
58.0
|
1.0
|
CB
|
A:SER130
|
4.7
|
39.1
|
1.0
|
CG
|
A:GLU128
|
4.8
|
43.9
|
1.0
|
CA
|
B:SER130
|
4.9
|
39.3
|
1.0
|
O
|
B:HOH475
|
4.9
|
68.0
|
1.0
|
O
|
B:HOH403
|
5.0
|
60.8
|
1.0
|
|
Potassium binding site 3 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 3 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K247
b:93.7
occ:1.00
|
O
|
C:HOH484
|
3.3
|
63.5
|
1.0
|
ND2
|
C:ASN192
|
3.3
|
40.4
|
1.0
|
CE3
|
C:TRP191
|
4.0
|
68.0
|
1.0
|
O1
|
C:EDO248
|
4.0
|
48.0
|
1.0
|
NE1
|
C:TRP188
|
4.1
|
37.9
|
1.0
|
CD1
|
C:TRP188
|
4.3
|
40.2
|
1.0
|
CG
|
C:ASN192
|
4.3
|
40.0
|
1.0
|
CZ3
|
C:TRP168
|
4.4
|
42.0
|
1.0
|
OH
|
C:TYR116
|
4.5
|
53.7
|
1.0
|
OD1
|
C:ASN192
|
4.6
|
58.1
|
1.0
|
CD
|
C:ARG12
|
4.6
|
47.3
|
1.0
|
CZ3
|
C:TRP191
|
4.7
|
59.7
|
1.0
|
CB
|
C:TRP191
|
4.7
|
42.5
|
1.0
|
CE2
|
C:TRP188
|
4.8
|
33.2
|
1.0
|
C1
|
C:EDO248
|
4.8
|
54.6
|
1.0
|
CE3
|
C:TRP168
|
4.9
|
37.6
|
1.0
|
OH
|
C:TYR72
|
4.9
|
31.1
|
1.0
|
CB
|
C:ARG12
|
4.9
|
44.0
|
1.0
|
SE
|
C:MSE76
|
5.0
|
60.4
|
0.7
|
CE
|
C:MSE76
|
5.0
|
70.8
|
1.0
|
CG
|
C:TRP188
|
5.0
|
35.5
|
1.0
|
|
Potassium binding site 4 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 4 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K247
b:85.2
occ:1.00
|
OE2
|
D:GLU128
|
3.1
|
64.7
|
1.0
|
OE2
|
C:GLU128
|
3.2
|
61.9
|
1.0
|
OG
|
D:SER130
|
3.5
|
42.8
|
1.0
|
OG
|
C:SER130
|
3.6
|
42.8
|
1.0
|
O
|
C:HOH497
|
3.8
|
65.7
|
1.0
|
CA
|
D:GLY131
|
3.9
|
39.2
|
1.0
|
N
|
D:GLY131
|
3.9
|
39.1
|
1.0
|
CA
|
C:GLY131
|
4.0
|
39.2
|
1.0
|
CD
|
D:GLU128
|
4.0
|
58.6
|
1.0
|
N
|
C:GLY131
|
4.1
|
39.7
|
1.0
|
O
|
C:SER130
|
4.1
|
42.1
|
1.0
|
C
|
D:SER130
|
4.1
|
40.4
|
1.0
|
C
|
C:SER130
|
4.1
|
40.3
|
1.0
|
CD
|
C:GLU128
|
4.2
|
58.5
|
1.0
|
O
|
D:SER130
|
4.2
|
41.8
|
1.0
|
CG
|
D:GLU128
|
4.4
|
42.5
|
1.0
|
CB
|
D:SER130
|
4.5
|
38.7
|
1.0
|
CB
|
C:SER130
|
4.5
|
38.3
|
1.0
|
CG
|
C:GLU128
|
4.6
|
42.0
|
1.0
|
O
|
C:HOH513
|
4.8
|
70.0
|
1.0
|
CA
|
D:SER130
|
5.0
|
39.2
|
1.0
|
OE1
|
D:GLU128
|
5.0
|
57.9
|
1.0
|
|
Potassium binding site 5 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 5 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K248
b:96.3
occ:1.00
|
ND2
|
D:ASN192
|
3.5
|
40.7
|
1.0
|
CZ3
|
D:TRP168
|
3.9
|
41.4
|
1.0
|
NE1
|
D:TRP188
|
3.9
|
37.9
|
1.0
|
O2
|
D:EDO249
|
3.9
|
45.1
|
1.0
|
C2
|
D:EDO249
|
4.1
|
55.8
|
1.0
|
CE3
|
D:TRP191
|
4.2
|
66.9
|
1.0
|
CD1
|
D:TRP188
|
4.2
|
37.7
|
1.0
|
OH
|
D:TYR116
|
4.4
|
55.4
|
1.0
|
CG
|
D:ASN192
|
4.4
|
41.4
|
1.0
|
OD1
|
D:ASN192
|
4.4
|
56.7
|
1.0
|
CD
|
D:ARG12
|
4.5
|
49.2
|
1.0
|
CE3
|
D:TRP168
|
4.5
|
36.0
|
1.0
|
CE2
|
D:TRP188
|
4.7
|
33.4
|
1.0
|
CE
|
D:MSE76
|
4.7
|
72.2
|
1.0
|
SE
|
D:MSE76
|
4.7
|
61.7
|
0.7
|
CZ3
|
D:TRP191
|
4.7
|
58.7
|
1.0
|
OH
|
D:TYR72
|
4.9
|
31.8
|
1.0
|
CH2
|
D:TRP168
|
4.9
|
43.0
|
1.0
|
|
Potassium binding site 6 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 6 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K247
b:82.0
occ:1.00
|
OE2
|
F:GLU128
|
3.1
|
63.3
|
1.0
|
OE2
|
E:GLU128
|
3.3
|
64.3
|
1.0
|
OG
|
F:SER130
|
3.6
|
44.0
|
1.0
|
OG
|
E:SER130
|
3.6
|
45.5
|
1.0
|
CA
|
F:GLY131
|
3.9
|
39.0
|
1.0
|
N
|
F:GLY131
|
3.9
|
39.2
|
1.0
|
CA
|
E:GLY131
|
4.0
|
39.2
|
1.0
|
CD
|
F:GLU128
|
4.0
|
57.1
|
1.0
|
N
|
E:GLY131
|
4.0
|
39.5
|
1.0
|
C
|
F:SER130
|
4.1
|
40.2
|
1.0
|
C
|
E:SER130
|
4.2
|
40.3
|
1.0
|
CD
|
E:GLU128
|
4.2
|
59.5
|
1.0
|
O
|
E:SER130
|
4.2
|
42.3
|
1.0
|
O
|
F:SER130
|
4.3
|
42.0
|
1.0
|
CG
|
F:GLU128
|
4.3
|
41.4
|
1.0
|
O
|
F:HOH482
|
4.3
|
65.6
|
1.0
|
CB
|
E:SER130
|
4.4
|
40.7
|
1.0
|
CG
|
E:GLU128
|
4.5
|
41.7
|
1.0
|
CB
|
F:SER130
|
4.6
|
39.2
|
1.0
|
CA
|
E:SER130
|
4.9
|
39.5
|
1.0
|
CA
|
F:SER130
|
5.0
|
39.2
|
1.0
|
|
Potassium binding site 7 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 7 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K247
b:92.4
occ:1.00
|
ND2
|
F:ASN192
|
3.5
|
40.3
|
1.0
|
CZ3
|
F:TRP168
|
4.0
|
44.8
|
1.0
|
NE1
|
F:TRP188
|
4.0
|
39.9
|
1.0
|
C2
|
F:EDO251
|
4.1
|
62.5
|
1.0
|
CE3
|
F:TRP191
|
4.2
|
69.3
|
1.0
|
O2
|
F:EDO251
|
4.2
|
60.9
|
1.0
|
OD1
|
F:ASN192
|
4.3
|
58.7
|
1.0
|
CE
|
F:MSE76
|
4.3
|
71.1
|
1.0
|
CD1
|
F:TRP188
|
4.3
|
39.5
|
1.0
|
CG
|
F:ASN192
|
4.3
|
42.7
|
1.0
|
OH
|
F:TYR116
|
4.4
|
58.6
|
1.0
|
CE3
|
F:TRP168
|
4.6
|
34.7
|
1.0
|
CD
|
F:ARG12
|
4.6
|
49.7
|
1.0
|
SE
|
F:MSE76
|
4.6
|
62.0
|
0.7
|
CZ3
|
F:TRP191
|
4.7
|
58.0
|
1.0
|
CE2
|
F:TRP188
|
4.8
|
37.2
|
1.0
|
|
Potassium binding site 8 out
of 8 in 2a2o
Go back to
Potassium Binding Sites List in 2a2o
Potassium binding site 8 out
of 8 in the Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of A Putativetena Family Transcriptional Regulator (BT_3146) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.16 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K247
b:78.5
occ:0.50
|
OE2
|
G:GLU128
|
3.1
|
61.4
|
1.0
|
OG
|
G:SER130
|
3.4
|
45.9
|
1.0
|
CA
|
G:GLY131
|
3.9
|
39.2
|
1.0
|
N
|
G:GLY131
|
4.0
|
39.2
|
1.0
|
C
|
G:SER130
|
4.1
|
39.9
|
1.0
|
O
|
G:SER130
|
4.2
|
41.7
|
1.0
|
CD
|
G:GLU128
|
4.2
|
55.7
|
1.0
|
CB
|
G:SER130
|
4.5
|
37.6
|
1.0
|
CG
|
G:GLU128
|
4.6
|
41.7
|
1.0
|
CA
|
G:SER130
|
4.9
|
39.1
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
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