Potassium in PDB 1zz1: Crystal Structure of A Hdac-Like Protein with Saha Bound
Protein crystallography data
The structure of Crystal Structure of A Hdac-Like Protein with Saha Bound, PDB code: 1zz1
was solved by
T.K.Nielsen,
C.Hildmann,
A.Dickmanns,
A.Schwienhorst,
R.Ficner,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.38 /
1.57
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.606,
94.716,
123.924,
90.00,
104.75,
90.00
|
|
R / Rfree (%)
|
17.2 /
20.1
|
Other elements in 1zz1:
The structure of Crystal Structure of A Hdac-Like Protein with Saha Bound also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of A Hdac-Like Protein with Saha Bound
(pdb code 1zz1). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the
Crystal Structure of A Hdac-Like Protein with Saha Bound, PDB code: 1zz1:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Potassium binding site 1 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 1 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K2450
b:15.9
occ:1.00
|
O
|
A:ASP180
|
2.5
|
13.7
|
1.0
|
|
O
|
A:LEU202
|
2.6
|
13.3
|
1.0
|
|
O
|
A:HIS182
|
2.6
|
13.2
|
1.0
|
|
OG
|
A:SER201
|
2.7
|
16.5
|
1.0
|
|
OD2
|
A:ASP178
|
2.7
|
16.6
|
1.0
|
|
O
|
A:ASP178
|
3.1
|
14.3
|
1.0
|
|
CG
|
A:ASP178
|
3.1
|
15.2
|
1.0
|
|
OD1
|
A:ASP178
|
3.5
|
15.0
|
1.0
|
|
C
|
A:ASP180
|
3.6
|
13.0
|
1.0
|
|
C
|
A:LEU202
|
3.7
|
14.0
|
1.0
|
|
C
|
A:ASP178
|
3.7
|
13.9
|
1.0
|
|
C
|
A:HIS182
|
3.7
|
13.4
|
1.0
|
|
CB
|
A:SER201
|
3.8
|
15.7
|
1.0
|
|
N
|
A:LEU202
|
3.9
|
14.5
|
1.0
|
|
N
|
A:ASP180
|
4.0
|
13.2
|
1.0
|
|
CB
|
A:ASP178
|
4.0
|
14.2
|
1.0
|
|
CB
|
A:HIS203
|
4.1
|
16.1
|
1.0
|
|
CA
|
A:SER201
|
4.1
|
15.3
|
1.0
|
|
N
|
A:GLY184
|
4.2
|
15.4
|
1.0
|
|
CA
|
A:ASP180
|
4.3
|
13.0
|
1.0
|
|
C
|
A:SER201
|
4.3
|
15.2
|
1.0
|
|
ND1
|
A:HIS203
|
4.3
|
18.5
|
1.0
|
|
C
|
A:TRP179
|
4.3
|
13.4
|
1.0
|
|
N
|
A:TRP179
|
4.3
|
13.9
|
1.0
|
|
CA
|
A:HIS183
|
4.3
|
15.4
|
1.0
|
|
CA
|
A:TRP179
|
4.4
|
14.0
|
1.0
|
|
N
|
A:HIS182
|
4.4
|
13.1
|
1.0
|
|
CB
|
A:ASP180
|
4.4
|
13.7
|
1.0
|
|
CE1
|
A:HIS142
|
4.4
|
13.3
|
1.0
|
|
N
|
A:HIS183
|
4.5
|
13.6
|
1.0
|
|
CA
|
A:LEU202
|
4.5
|
14.7
|
1.0
|
|
ND1
|
A:HIS142
|
4.5
|
15.6
|
1.0
|
|
CA
|
A:ASP178
|
4.5
|
14.7
|
1.0
|
|
O
|
A:HOH2469
|
4.5
|
13.8
|
1.0
|
|
N
|
A:HIS203
|
4.5
|
13.8
|
1.0
|
|
CA
|
A:HIS203
|
4.5
|
14.2
|
1.0
|
|
C
|
A:HIS183
|
4.6
|
14.6
|
1.0
|
|
C
|
A:VAL181
|
4.7
|
12.2
|
1.0
|
|
CG
|
A:HIS203
|
4.7
|
15.7
|
1.0
|
|
N
|
A:VAL181
|
4.7
|
12.4
|
1.0
|
|
CA
|
A:HIS182
|
4.7
|
12.8
|
1.0
|
|
OD1
|
A:ASP180
|
4.9
|
13.8
|
1.0
|
|
Potassium binding site 2 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 2 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K2449
b:32.0
occ:1.00
|
O
|
A:HOH2501
|
2.4
|
25.2
|
1.0
|
|
O
|
A:VAL197
|
2.6
|
19.2
|
1.0
|
|
O
|
A:TRP191
|
2.6
|
21.8
|
1.0
|
|
O
|
A:ASP194
|
2.8
|
23.6
|
1.0
|
|
O
|
A:TYR226
|
2.9
|
20.9
|
1.0
|
|
CB
|
A:TRP191
|
3.5
|
21.0
|
1.0
|
|
C
|
A:TRP191
|
3.5
|
21.2
|
1.0
|
|
C
|
A:VAL197
|
3.8
|
18.8
|
1.0
|
|
C
|
A:TYR226
|
3.8
|
21.1
|
1.0
|
|
C
|
A:ASP194
|
3.9
|
22.9
|
1.0
|
|
OG1
|
A:THR199
|
3.9
|
18.8
|
1.0
|
|
CB
|
A:TYR226
|
4.0
|
23.1
|
1.0
|
|
CA
|
A:TRP191
|
4.1
|
21.0
|
1.0
|
|
N
|
A:THR199
|
4.5
|
17.8
|
1.0
|
|
N
|
A:TRP192
|
4.5
|
21.3
|
1.0
|
|
CG2
|
A:THR199
|
4.5
|
19.3
|
1.0
|
|
N
|
A:ASP194
|
4.5
|
24.2
|
1.0
|
|
CA
|
A:TYR226
|
4.6
|
21.4
|
1.0
|
|
CA
|
A:LEU198
|
4.6
|
17.8
|
1.0
|
|
N
|
A:LEU198
|
4.6
|
18.6
|
1.0
|
|
N
|
A:ASN227
|
4.6
|
20.3
|
1.0
|
|
CA
|
A:ASP194
|
4.7
|
23.3
|
1.0
|
|
O
|
A:GLY223
|
4.7
|
24.3
|
1.0
|
|
CB
|
A:THR199
|
4.8
|
17.4
|
1.0
|
|
CA
|
A:VAL197
|
4.8
|
19.5
|
1.0
|
|
CG
|
A:TRP191
|
4.8
|
23.1
|
1.0
|
|
O
|
A:TRP192
|
4.8
|
22.5
|
1.0
|
|
CA
|
A:TRP192
|
4.8
|
22.0
|
1.0
|
|
N
|
A:PRO195
|
4.8
|
22.7
|
1.0
|
|
C
|
A:TRP192
|
4.9
|
22.1
|
1.0
|
|
N
|
A:VAL197
|
4.9
|
19.4
|
1.0
|
|
CA
|
A:PRO195
|
4.9
|
21.8
|
1.0
|
|
C
|
A:LEU198
|
4.9
|
18.2
|
1.0
|
|
CB
|
A:ASP194
|
5.0
|
23.9
|
1.0
|
|
CB
|
A:VAL197
|
5.0
|
19.6
|
1.0
|
|
Potassium binding site 3 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 3 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K2550
b:9.8
occ:1.00
|
O
|
B:ASP180
|
2.5
|
8.9
|
1.0
|
|
O
|
B:LEU202
|
2.6
|
8.1
|
1.0
|
|
O
|
B:HIS182
|
2.6
|
9.0
|
1.0
|
|
OD1
|
B:ASP178
|
2.8
|
10.0
|
1.0
|
|
OG
|
B:SER201
|
2.8
|
8.3
|
1.0
|
|
O
|
B:ASP178
|
3.0
|
8.3
|
1.0
|
|
CG
|
B:ASP178
|
3.2
|
9.5
|
1.0
|
|
OD2
|
B:ASP178
|
3.5
|
9.4
|
1.0
|
|
C
|
B:ASP180
|
3.6
|
8.7
|
1.0
|
|
C
|
B:LEU202
|
3.6
|
8.6
|
1.0
|
|
C
|
B:ASP178
|
3.7
|
9.3
|
1.0
|
|
C
|
B:HIS182
|
3.7
|
8.4
|
1.0
|
|
N
|
B:LEU202
|
3.9
|
9.5
|
1.0
|
|
CB
|
B:SER201
|
3.9
|
9.0
|
1.0
|
|
N
|
B:ASP180
|
3.9
|
8.5
|
1.0
|
|
CB
|
B:ASP178
|
4.0
|
7.7
|
1.0
|
|
CB
|
B:HIS203
|
4.0
|
6.6
|
1.0
|
|
N
|
B:GLY184
|
4.1
|
10.0
|
1.0
|
|
CA
|
B:SER201
|
4.1
|
9.1
|
1.0
|
|
CA
|
B:ASP180
|
4.2
|
8.5
|
1.0
|
|
C
|
B:TRP179
|
4.3
|
8.2
|
1.0
|
|
C
|
B:SER201
|
4.3
|
9.6
|
1.0
|
|
N
|
B:TRP179
|
4.3
|
8.4
|
1.0
|
|
CD2
|
B:HIS203
|
4.3
|
4.6
|
1.0
|
|
CA
|
B:TRP179
|
4.3
|
9.2
|
1.0
|
|
CB
|
B:ASP180
|
4.4
|
8.3
|
1.0
|
|
CA
|
B:HIS183
|
4.4
|
9.2
|
1.0
|
|
N
|
B:HIS182
|
4.4
|
8.5
|
1.0
|
|
CE1
|
B:HIS142
|
4.4
|
10.3
|
1.0
|
|
CA
|
B:ASP178
|
4.4
|
8.8
|
1.0
|
|
CA
|
B:LEU202
|
4.5
|
9.4
|
1.0
|
|
ND1
|
B:HIS142
|
4.5
|
9.9
|
1.0
|
|
N
|
B:HIS183
|
4.5
|
7.6
|
1.0
|
|
N
|
B:HIS203
|
4.5
|
7.7
|
1.0
|
|
CA
|
B:HIS203
|
4.5
|
7.1
|
1.0
|
|
C
|
B:HIS183
|
4.6
|
9.1
|
1.0
|
|
CG
|
B:HIS203
|
4.6
|
8.8
|
1.0
|
|
O
|
B:HOH2555
|
4.6
|
7.8
|
1.0
|
|
N
|
B:VAL181
|
4.6
|
8.1
|
1.0
|
|
C
|
B:VAL181
|
4.6
|
8.1
|
1.0
|
|
CA
|
B:HIS182
|
4.7
|
8.4
|
1.0
|
|
O
|
B:TRP179
|
4.9
|
8.5
|
1.0
|
|
CA
|
B:GLY184
|
4.9
|
9.9
|
1.0
|
|
OD1
|
B:ASP180
|
4.9
|
8.2
|
1.0
|
|
CA
|
B:VAL181
|
4.9
|
8.0
|
1.0
|
|
Potassium binding site 4 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 4 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K2549
b:22.4
occ:1.00
|
O
|
B:VAL197
|
2.5
|
13.4
|
1.0
|
|
O
|
B:TRP191
|
2.5
|
12.1
|
1.0
|
|
O
|
B:ASP194
|
2.5
|
13.8
|
1.0
|
|
O
|
B:HOH2604
|
2.5
|
16.6
|
1.0
|
|
O
|
B:TYR226
|
3.4
|
11.5
|
1.0
|
|
C
|
B:TRP191
|
3.5
|
12.6
|
1.0
|
|
CB
|
B:TRP191
|
3.5
|
12.1
|
1.0
|
|
C
|
B:ASP194
|
3.5
|
14.5
|
1.0
|
|
C
|
B:VAL197
|
3.7
|
12.2
|
1.0
|
|
O
|
B:HOH2780
|
3.8
|
25.9
|
1.0
|
|
CB
|
B:TYR226
|
4.1
|
11.5
|
1.0
|
|
CA
|
B:TRP191
|
4.1
|
13.1
|
1.0
|
|
N
|
B:ASP194
|
4.2
|
14.6
|
1.0
|
|
C
|
B:TYR226
|
4.2
|
11.3
|
1.0
|
|
CA
|
B:ASP194
|
4.3
|
14.6
|
1.0
|
|
OG1
|
B:THR199
|
4.5
|
13.5
|
1.0
|
|
N
|
B:PRO195
|
4.5
|
13.5
|
1.0
|
|
N
|
B:VAL197
|
4.5
|
12.5
|
1.0
|
|
N
|
B:TRP192
|
4.5
|
13.3
|
1.0
|
|
CB
|
B:ASP194
|
4.5
|
15.2
|
1.0
|
|
CA
|
B:PRO195
|
4.6
|
14.1
|
1.0
|
|
CA
|
B:VAL197
|
4.6
|
12.7
|
1.0
|
|
N
|
B:LEU198
|
4.6
|
12.2
|
1.0
|
|
CA
|
B:LEU198
|
4.7
|
12.2
|
1.0
|
|
O
|
B:TRP192
|
4.7
|
12.2
|
1.0
|
|
N
|
B:THR199
|
4.7
|
11.4
|
1.0
|
|
CA
|
B:TYR226
|
4.7
|
11.5
|
1.0
|
|
C
|
B:TRP192
|
4.7
|
13.8
|
1.0
|
|
CG
|
B:TRP191
|
4.8
|
14.3
|
1.0
|
|
CB
|
B:VAL197
|
4.8
|
13.5
|
1.0
|
|
CG2
|
B:THR199
|
4.8
|
11.8
|
1.0
|
|
CA
|
B:TRP192
|
4.9
|
13.3
|
1.0
|
|
O
|
B:GLY223
|
4.9
|
14.5
|
1.0
|
|
C
|
B:PRO195
|
4.9
|
13.6
|
1.0
|
|
Potassium binding site 5 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 5 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K2650
b:10.4
occ:1.00
|
O
|
C:ASP180
|
2.5
|
8.2
|
1.0
|
|
O
|
C:HIS182
|
2.6
|
9.0
|
1.0
|
|
O
|
C:LEU202
|
2.6
|
8.1
|
1.0
|
|
OD2
|
C:ASP178
|
2.7
|
10.3
|
1.0
|
|
OG
|
C:SER201
|
2.7
|
9.8
|
1.0
|
|
O
|
C:ASP178
|
3.1
|
7.9
|
1.0
|
|
CG
|
C:ASP178
|
3.1
|
8.5
|
1.0
|
|
OD1
|
C:ASP178
|
3.5
|
10.5
|
1.0
|
|
C
|
C:ASP180
|
3.6
|
7.5
|
1.0
|
|
C
|
C:LEU202
|
3.7
|
8.4
|
1.0
|
|
C
|
C:HIS182
|
3.7
|
9.2
|
1.0
|
|
C
|
C:ASP178
|
3.7
|
8.8
|
1.0
|
|
CB
|
C:SER201
|
3.9
|
7.4
|
1.0
|
|
N
|
C:LEU202
|
3.9
|
8.7
|
1.0
|
|
N
|
C:ASP180
|
4.0
|
7.5
|
1.0
|
|
CB
|
C:ASP178
|
4.0
|
7.6
|
1.0
|
|
N
|
C:GLY184
|
4.0
|
9.2
|
1.0
|
|
CB
|
C:HIS203
|
4.1
|
8.6
|
1.0
|
|
CA
|
C:SER201
|
4.1
|
7.4
|
1.0
|
|
CA
|
C:ASP180
|
4.2
|
7.7
|
1.0
|
|
CA
|
C:HIS183
|
4.3
|
9.8
|
1.0
|
|
CD2
|
C:HIS203
|
4.3
|
7.5
|
1.0
|
|
C
|
C:TRP179
|
4.3
|
8.0
|
1.0
|
|
C
|
C:SER201
|
4.3
|
9.1
|
1.0
|
|
CB
|
C:ASP180
|
4.3
|
8.5
|
1.0
|
|
N
|
C:TRP179
|
4.3
|
7.5
|
1.0
|
|
CA
|
C:TRP179
|
4.4
|
8.8
|
1.0
|
|
N
|
C:HIS182
|
4.4
|
7.4
|
1.0
|
|
N
|
C:HIS183
|
4.4
|
9.0
|
1.0
|
|
CA
|
C:LEU202
|
4.5
|
8.9
|
1.0
|
|
ND1
|
C:HIS142
|
4.5
|
8.4
|
1.0
|
|
CE1
|
C:HIS142
|
4.5
|
8.6
|
1.0
|
|
C
|
C:HIS183
|
4.5
|
9.1
|
1.0
|
|
CA
|
C:ASP178
|
4.5
|
7.8
|
1.0
|
|
N
|
C:HIS203
|
4.6
|
8.6
|
1.0
|
|
CG
|
C:HIS203
|
4.6
|
9.8
|
1.0
|
|
CA
|
C:HIS203
|
4.6
|
8.2
|
1.0
|
|
O
|
C:HOH2653
|
4.6
|
8.6
|
1.0
|
|
N
|
C:VAL181
|
4.7
|
7.3
|
1.0
|
|
C
|
C:VAL181
|
4.7
|
8.5
|
1.0
|
|
CA
|
C:HIS182
|
4.7
|
8.2
|
1.0
|
|
OD1
|
C:ASP180
|
4.9
|
8.4
|
1.0
|
|
CA
|
C:GLY184
|
4.9
|
9.0
|
1.0
|
|
CA
|
C:VAL181
|
5.0
|
7.2
|
1.0
|
|
Potassium binding site 6 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 6 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K2649
b:18.8
occ:1.00
|
O
|
C:HOH2767
|
2.3
|
21.3
|
1.0
|
|
O
|
C:TRP191
|
2.5
|
12.4
|
1.0
|
|
O
|
C:VAL197
|
2.6
|
12.9
|
1.0
|
|
O
|
C:ASP194
|
2.8
|
13.1
|
1.0
|
|
O
|
C:HOH2774
|
3.0
|
19.7
|
1.0
|
|
O
|
C:TYR226
|
3.1
|
13.9
|
1.0
|
|
C
|
C:TRP191
|
3.4
|
13.1
|
1.0
|
|
CB
|
C:TRP191
|
3.5
|
12.9
|
1.0
|
|
C
|
C:VAL197
|
3.8
|
12.1
|
1.0
|
|
C
|
C:ASP194
|
3.9
|
14.7
|
1.0
|
|
C
|
C:TYR226
|
3.9
|
14.4
|
1.0
|
|
CB
|
C:TYR226
|
4.0
|
14.6
|
1.0
|
|
OG1
|
C:THR199
|
4.1
|
11.5
|
1.0
|
|
CA
|
C:TRP191
|
4.1
|
12.4
|
1.0
|
|
N
|
C:ASP194
|
4.3
|
15.7
|
1.0
|
|
N
|
C:TRP192
|
4.4
|
13.3
|
1.0
|
|
CA
|
C:TYR226
|
4.5
|
13.9
|
1.0
|
|
N
|
C:THR199
|
4.5
|
9.8
|
1.0
|
|
CA
|
C:ASP194
|
4.6
|
14.6
|
1.0
|
|
N
|
C:ASN227
|
4.6
|
13.1
|
1.0
|
|
O
|
C:TRP192
|
4.6
|
15.8
|
1.0
|
|
CG2
|
C:THR199
|
4.6
|
10.1
|
1.0
|
|
CA
|
C:LEU198
|
4.6
|
10.6
|
1.0
|
|
N
|
C:LEU198
|
4.7
|
11.4
|
1.0
|
|
C
|
C:TRP192
|
4.7
|
14.7
|
1.0
|
|
CA
|
C:TRP192
|
4.7
|
14.6
|
1.0
|
|
O
|
C:GLY223
|
4.8
|
17.3
|
1.0
|
|
CA
|
C:VAL197
|
4.8
|
12.6
|
1.0
|
|
N
|
C:PRO195
|
4.8
|
14.1
|
1.0
|
|
CB
|
C:ASP194
|
4.8
|
14.2
|
1.0
|
|
CG
|
C:TRP191
|
4.8
|
11.7
|
1.0
|
|
N
|
C:VAL197
|
4.9
|
12.6
|
1.0
|
|
CA
|
C:PRO195
|
4.9
|
13.5
|
1.0
|
|
CB
|
C:THR199
|
4.9
|
10.0
|
1.0
|
|
C
|
C:LEU198
|
5.0
|
10.7
|
1.0
|
|
CA
|
C:ASN227
|
5.0
|
12.3
|
1.0
|
|
Potassium binding site 7 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 7 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K2750
b:12.6
occ:1.00
|
O
|
D:ASP180
|
2.5
|
11.2
|
1.0
|
|
O
|
D:HIS182
|
2.6
|
11.9
|
1.0
|
|
O
|
D:LEU202
|
2.6
|
13.2
|
1.0
|
|
OD1
|
D:ASP178
|
2.7
|
13.8
|
1.0
|
|
OG
|
D:SER201
|
2.7
|
13.0
|
1.0
|
|
O
|
D:ASP178
|
3.0
|
11.8
|
1.0
|
|
CG
|
D:ASP178
|
3.1
|
12.9
|
1.0
|
|
OD2
|
D:ASP178
|
3.5
|
11.7
|
1.0
|
|
C
|
D:ASP180
|
3.6
|
10.9
|
1.0
|
|
C
|
D:LEU202
|
3.7
|
12.9
|
1.0
|
|
C
|
D:ASP178
|
3.7
|
11.2
|
1.0
|
|
C
|
D:HIS182
|
3.7
|
12.0
|
1.0
|
|
N
|
D:LEU202
|
3.9
|
12.4
|
1.0
|
|
CB
|
D:SER201
|
3.9
|
11.6
|
1.0
|
|
N
|
D:ASP180
|
3.9
|
10.6
|
1.0
|
|
CB
|
D:ASP178
|
4.0
|
11.9
|
1.0
|
|
N
|
D:GLY184
|
4.0
|
11.7
|
1.0
|
|
CB
|
D:HIS203
|
4.1
|
11.4
|
1.0
|
|
CA
|
D:SER201
|
4.1
|
12.2
|
1.0
|
|
CA
|
D:ASP180
|
4.2
|
10.5
|
1.0
|
|
C
|
D:SER201
|
4.2
|
12.6
|
1.0
|
|
C
|
D:TRP179
|
4.3
|
10.2
|
1.0
|
|
N
|
D:TRP179
|
4.3
|
10.9
|
1.0
|
|
ND1
|
D:HIS203
|
4.3
|
12.2
|
1.0
|
|
CA
|
D:HIS183
|
4.3
|
12.3
|
1.0
|
|
CA
|
D:TRP179
|
4.4
|
10.7
|
1.0
|
|
CB
|
D:ASP180
|
4.4
|
10.3
|
1.0
|
|
N
|
D:HIS182
|
4.4
|
11.5
|
1.0
|
|
CE1
|
D:HIS142
|
4.4
|
9.3
|
1.0
|
|
CA
|
D:ASP178
|
4.4
|
11.6
|
1.0
|
|
ND1
|
D:HIS142
|
4.4
|
12.7
|
1.0
|
|
CA
|
D:LEU202
|
4.5
|
12.3
|
1.0
|
|
N
|
D:HIS183
|
4.5
|
11.9
|
1.0
|
|
N
|
D:HIS203
|
4.5
|
11.1
|
1.0
|
|
C
|
D:HIS183
|
4.5
|
11.5
|
1.0
|
|
O
|
D:HOH2757
|
4.5
|
12.2
|
1.0
|
|
CA
|
D:HIS203
|
4.6
|
11.4
|
1.0
|
|
C
|
D:VAL181
|
4.7
|
10.9
|
1.0
|
|
CG
|
D:HIS203
|
4.7
|
12.8
|
1.0
|
|
N
|
D:VAL181
|
4.7
|
10.5
|
1.0
|
|
CA
|
D:HIS182
|
4.7
|
11.8
|
1.0
|
|
CA
|
D:GLY184
|
4.9
|
12.0
|
1.0
|
|
O
|
D:TRP179
|
5.0
|
10.8
|
1.0
|
|
OD1
|
D:ASP180
|
5.0
|
10.1
|
1.0
|
|
Potassium binding site 8 out
of 8 in 1zz1
Go back to
Potassium Binding Sites List in 1zz1
Potassium binding site 8 out
of 8 in the Crystal Structure of A Hdac-Like Protein with Saha Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of A Hdac-Like Protein with Saha Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K2749
b:25.6
occ:1.00
|
O
|
D:HOH2822
|
2.2
|
17.1
|
1.0
|
|
O
|
D:TRP191
|
2.5
|
16.0
|
1.0
|
|
O
|
D:VAL197
|
2.5
|
15.7
|
1.0
|
|
O
|
D:ASP194
|
2.6
|
17.2
|
1.0
|
|
O
|
D:TYR226
|
3.3
|
14.7
|
1.0
|
|
O
|
D:HOH2957
|
3.4
|
32.5
|
1.0
|
|
C
|
D:TRP191
|
3.5
|
16.1
|
1.0
|
|
CB
|
D:TRP191
|
3.5
|
16.2
|
1.0
|
|
C
|
D:ASP194
|
3.6
|
17.6
|
1.0
|
|
C
|
D:VAL197
|
3.7
|
14.4
|
1.0
|
|
CB
|
D:TYR226
|
4.0
|
15.4
|
1.0
|
|
C
|
D:TYR226
|
4.0
|
15.7
|
1.0
|
|
CA
|
D:TRP191
|
4.1
|
16.0
|
1.0
|
|
N
|
D:ASP194
|
4.3
|
17.1
|
1.0
|
|
OG1
|
D:THR199
|
4.3
|
15.2
|
1.0
|
|
CA
|
D:ASP194
|
4.4
|
16.9
|
1.0
|
|
N
|
D:TRP192
|
4.5
|
16.2
|
1.0
|
|
N
|
D:PRO195
|
4.6
|
16.7
|
1.0
|
|
CA
|
D:VAL197
|
4.6
|
14.8
|
1.0
|
|
N
|
D:LEU198
|
4.6
|
14.1
|
1.0
|
|
N
|
D:VAL197
|
4.6
|
14.8
|
1.0
|
|
CB
|
D:ASP194
|
4.6
|
16.9
|
1.0
|
|
CA
|
D:PRO195
|
4.6
|
16.7
|
1.0
|
|
CA
|
D:LEU198
|
4.6
|
13.9
|
1.0
|
|
CA
|
D:TYR226
|
4.6
|
15.4
|
1.0
|
|
O
|
D:TRP192
|
4.6
|
16.3
|
1.0
|
|
N
|
D:THR199
|
4.7
|
13.3
|
1.0
|
|
C
|
D:TRP192
|
4.7
|
16.6
|
1.0
|
|
N
|
D:ASN227
|
4.8
|
14.7
|
1.0
|
|
CG
|
D:TRP191
|
4.8
|
16.1
|
1.0
|
|
CG2
|
D:THR199
|
4.8
|
16.8
|
1.0
|
|
CA
|
D:TRP192
|
4.8
|
16.1
|
1.0
|
|
CB
|
D:VAL197
|
4.9
|
15.3
|
1.0
|
|
O
|
D:GLY223
|
4.9
|
17.0
|
1.0
|
|
Reference:
T.K.Nielsen,
C.Hildmann,
A.Dickmanns,
A.Schwienhorst,
R.Ficner.
Crystal Structure of A Bacterial Class 2 Histone Deacetylase Homologue J.Mol.Biol. V. 354 107 2005.
ISSN: ISSN 0022-2836
PubMed: 16242151
DOI: 10.1016/J.JMB.2005.09.065
Page generated: Mon Aug 12 05:55:45 2024
|
