Potassium in PDB 1zho: The Structure of A Ribosomal Protein L1 in Complex with Mrna

The structure of The Structure of A Ribosomal Protein L1 in Complex with Mrna, PDB code: 1zho was solved by N.Nevskaya, S.Tishchenko, S.Volchkov, V.Kljashtorny, E.Nikonova, O.Nikonov, A.Nikulin, C.Kohrer, W.Piendl, R.Zimmermann, P.Stockley, M.Garber, S.Nikonov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.06 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.600, 101.900, 119.600, 90.00, 93.66, 90.00
R / Rfree (%)	21.8 / 28.1

The binding sites of Potassium atom in the The Structure of A Ribosomal Protein L1 in Complex with Mrna (pdb code 1zho). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the The Structure of A Ribosomal Protein L1 in Complex with Mrna, PDB code: 1zho:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in the The Structure of A Ribosomal Protein L1 in Complex with Mrna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of The Structure of A Ribosomal Protein L1 in Complex with Mrna within 5.0Å range: probe atom residue distance (Å) B Occ D:K39 b:42.0 occ:1.00 O C:THR216 2.9 45.3 1.0 O2 D:U30 3.0 45.7 1.0 O C:THR217 3.1 43.3 1.0 O2' D:U30 3.3 38.8 1.0 OE2 C:GLU42 3.3 42.6 1.0 O4' D:U31 3.4 40.9 1.0 CD C:GLU42 3.6 44.9 1.0 C C:THR217 3.6 43.5 1.0 OE1 C:GLU42 3.7 48.7 1.0 CA C:THR217 3.8 42.9 1.0 C C:THR216 3.8 44.4 1.0 CG2 C:THR215 3.8 39.3 1.0 C2' D:U30 3.9 37.9 1.0 C1' D:U30 4.0 38.7 1.0 C1' D:U31 4.0 40.0 1.0 C2 D:U30 4.1 43.9 1.0 N C:THR217 4.2 44.1 1.0 N1 D:U31 4.4 39.6 1.0 N3 D:G10 4.4 39.9 1.0 OG1 C:THR215 4.5 40.8 1.0 C4' D:U31 4.6 40.6 1.0 N1 D:U30 4.6 41.4 1.0 CG C:GLU42 4.6 43.8 1.0 C2 D:A9 4.7 37.9 1.0 NE2 C:HIS44 4.7 45.7 1.0 O C:GLY219 4.7 46.3 1.0 N C:MSE218 4.7 44.9 1.0 C6 D:U31 4.7 37.9 1.0 CB C:THR215 4.8 41.0 1.0 C1' D:G10 4.9 37.9 1.0 N2 D:G10 4.9 42.2 1.0 C2 D:U31 4.9 39.7 1.0 C5' D:U31 4.9 38.3 1.0 O2' D:G10 4.9 36.9 1.0 N C:THR216 5.0 43.5 1.0

Potassium binding site 2 out of 4 in the The Structure of A Ribosomal Protein L1 in Complex with Mrna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of The Structure of A Ribosomal Protein L1 in Complex with Mrna within 5.0Å range: probe atom residue distance (Å) B Occ H:K39 b:61.1 occ:1.00 O2' H:U30 2.6 42.2 1.0 O G:THR216 2.6 51.4 1.0 O2 H:U30 3.0 45.6 1.0 O G:THR217 3.0 50.6 1.0 O4' H:U31 3.2 45.0 1.0 C2' H:U30 3.4 41.8 1.0 OE1 G:GLU42 3.5 32.5 1.0 C G:THR217 3.5 51.0 1.0 C G:THR216 3.5 48.9 1.0 C1' H:U30 3.6 43.2 1.0 CA G:THR217 3.7 50.6 1.0 OE2 G:GLU42 3.8 32.1 1.0 OG1 G:THR215 3.8 46.4 1.0 CD G:GLU42 3.9 32.4 1.0 N G:THR217 4.0 49.7 1.0 C2 H:U30 4.0 45.7 1.0 C4' H:U31 4.2 44.2 1.0 CG2 G:THR215 4.2 45.4 1.0 C1' H:U31 4.2 45.6 1.0 C5' H:U31 4.2 44.3 1.0 N1 H:U30 4.3 45.2 1.0 O G:GLY219 4.4 51.9 1.0 N G:MSE218 4.5 53.0 1.0 N G:THR216 4.6 45.4 1.0 CB G:THR215 4.6 46.0 1.0 N1 H:U31 4.6 47.8 1.0 C6 H:U31 4.7 48.3 1.0 O4' H:U30 4.7 41.0 1.0 O5' H:U31 4.7 45.2 1.0 CA G:THR216 4.8 46.7 1.0 C3' H:U30 4.8 42.0 1.0 N3 H:G10 4.9 47.2 1.0 N2 H:G10 5.0 46.9 1.0

Potassium binding site 3 out of 4 in the The Structure of A Ribosomal Protein L1 in Complex with Mrna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of The Structure of A Ribosomal Protein L1 in Complex with Mrna within 5.0Å range: probe atom residue distance (Å) B Occ A:K229 b:33.2 occ:1.00 O A:THR216 2.7 36.1 1.0 O2 B:U30 3.1 37.6 1.0 O2' B:U30 3.1 33.3 1.0 O A:THR217 3.2 38.1 1.0 O4' B:U31 3.3 30.0 1.0 OE2 A:GLU42 3.4 28.7 1.0 OE1 A:GLU42 3.5 34.1 1.0 CD A:GLU42 3.5 31.5 1.0 C A:THR216 3.7 34.1 1.0 C A:THR217 3.7 37.8 1.0 C2' B:U30 3.8 34.3 1.0 OG1 A:THR215 3.9 34.8 1.0 CA A:THR217 3.9 35.6 1.0 C1' B:U31 4.0 30.9 1.0 C1' B:U30 4.0 35.5 1.0 C2 B:U30 4.2 38.0 1.0 CG2 A:THR215 4.2 32.6 1.0 N A:THR217 4.3 34.9 1.0 N1 B:U31 4.4 32.8 1.0 C4' B:U31 4.4 30.8 1.0 CG A:GLU42 4.5 30.0 1.0 N3 B:G10 4.6 36.6 1.0 O A:GLY219 4.6 35.0 1.0 N1 B:U30 4.6 37.4 1.0 CB A:THR215 4.7 33.3 1.0 N A:MSE218 4.7 41.0 1.0 C6 B:U31 4.7 32.9 1.0 N2 B:G10 4.7 37.3 1.0 N A:THR216 4.8 32.2 1.0 C5' B:U31 4.8 31.8 1.0 C2 B:A9 4.9 29.6 1.0 NE2 A:HIS44 4.9 31.9 1.0 CA A:THR216 4.9 33.4 1.0

Potassium binding site 4 out of 4 in the The Structure of A Ribosomal Protein L1 in Complex with Mrna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of The Structure of A Ribosomal Protein L1 in Complex with Mrna within 5.0Å range: probe atom residue distance (Å) B Occ E:K229 b:66.4 occ:1.00 O2' F:U30 3.0 55.3 1.0 O E:THR216 3.1 58.3 1.0 O E:THR217 3.2 56.5 1.0 O4' F:U31 3.2 49.1 1.0 O2 F:U30 3.2 60.4 1.0 OE1 E:GLU42 3.4 42.9 1.0 OE2 E:GLU42 3.5 45.4 1.0 CD E:GLU42 3.5 44.4 1.0 C E:THR217 3.6 57.9 1.0 CA E:THR217 3.7 57.4 1.0 CG2 E:THR215 3.7 57.4 1.0 C E:THR216 3.8 57.5 1.0 C2' F:U30 3.8 52.6 1.0 C1' F:U30 3.9 54.0 1.0 C1' F:U31 4.0 50.2 1.0 N E:THR217 4.1 57.6 1.0 C2 F:U30 4.3 58.1 1.0 C4' F:U31 4.3 49.3 1.0 N1 F:U31 4.3 52.1 1.0 OG1 E:THR215 4.3 57.9 1.0 CG E:GLU42 4.4 43.9 1.0 C6 F:U31 4.4 51.9 1.0 C5' F:U31 4.5 50.0 1.0 N E:MSE218 4.6 58.9 1.0 N1 F:U30 4.7 56.7 1.0 CB E:THR215 4.7 57.0 1.0 N3 F:G10 4.8 59.5 1.0 O5' F:U31 4.8 51.8 1.0 C2 F:A9 4.9 51.4 1.0 N E:THR216 4.9 55.0 1.0 CA E:THR216 5.0 57.1 1.0

N.Nevskaya, S.Tishchenko, S.Volchkov, V.Kljashtorny, E.Nikonova, O.Nikonov, A.Nikulin, C.Kohrer, W.Piendl, R.Zimmermann, P.Stockley, M.Garber, S.Nikonov. New Insights Into the Interaction of Ribosomal Protein L1 with Rna. J.Mol.Biol. V. 355 747 2006.
ISSN: ISSN 0022-2836
PubMed: 16330048
DOI: 10.1016/J.JMB.2005.10.084