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Potassium in PDB 1zcz: Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution

Protein crystallography data

The structure of Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution, PDB code: 1zcz was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.88
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 62.084, 58.630, 72.749, 99.26, 96.89, 106.13
R / Rfree (%) 15.6 / 19.7

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution (pdb code 1zcz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution, PDB code: 1zcz:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 1zcz

Go back to Potassium Binding Sites List in 1zcz
Potassium binding site 1 out of 2 in the Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K453

b:34.0
occ:1.00
O A:ALA353 2.4 42.1 1.0
O A:VAL350 2.5 37.5 1.0
O A:VAL449 2.7 38.1 1.0
OD2 A:ASP399 2.7 43.8 1.0
O A:GLU351 2.8 42.2 1.0
C A:GLU351 3.3 38.6 1.0
CB A:ASP399 3.5 35.4 1.0
N A:ARG451 3.5 39.1 1.0
C A:ALA353 3.6 43.6 1.0
CG A:ASP399 3.6 38.1 1.0
CB A:ARG451 3.6 42.4 1.0
C A:VAL350 3.6 37.7 1.0
CA A:GLU351 3.8 37.7 1.0
OG A:SER355 3.9 36.4 1.0
N A:ALA353 3.9 41.7 1.0
C A:VAL449 3.9 38.8 1.0
C A:PHE450 3.9 40.2 1.0
CA A:ARG451 4.1 40.6 1.0
CA A:ALA353 4.2 40.6 1.0
N A:GLU351 4.2 35.5 1.0
N A:GLY352 4.2 39.7 1.0
CA A:PHE450 4.3 39.3 1.0
C A:GLY352 4.4 40.1 1.0
O A:ARG451 4.4 47.6 1.0
N A:PHE450 4.5 38.6 1.0
CB A:ALA353 4.6 41.3 1.0
O A:PHE450 4.6 39.9 1.0
N A:LYS354 4.7 42.6 1.0
CA A:GLY352 4.7 38.4 1.0
C A:ARG451 4.7 42.2 1.0
CG2 A:VAL449 4.7 39.5 1.0
CB A:ALA357 4.8 36.7 1.0
OD1 A:ASP399 4.8 39.0 1.0
N A:SER355 4.8 39.6 1.0
CB A:VAL449 4.9 35.7 1.0
C A:LYS354 4.9 41.3 1.0
CA A:VAL350 4.9 40.1 1.0
CG A:ARG451 4.9 41.0 1.0
CA A:LYS354 5.0 42.1 1.0
O A:GLY352 5.0 40.5 1.0

Potassium binding site 2 out of 2 in 1zcz

Go back to Potassium Binding Sites List in 1zcz
Potassium binding site 2 out of 2 in the Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Phosphoribosylaminoimidazolecarboxamide Formyltransferase / Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K453

b:33.5
occ:1.00
O B:ALA353 2.5 40.8 1.0
O B:VAL350 2.5 36.1 1.0
O B:VAL449 2.7 37.0 1.0
OD2 B:ASP399 2.7 42.5 1.0
O B:GLU351 2.9 39.6 1.0
C B:GLU351 3.4 37.8 1.0
N B:ARG451 3.4 40.1 1.0
CB B:ARG451 3.6 39.9 1.0
CB B:ASP399 3.6 38.1 1.0
CG B:ASP399 3.6 38.9 1.0
C B:ALA353 3.6 41.0 1.0
C B:VAL350 3.6 36.8 1.0
CA B:GLU351 3.8 36.6 1.0
OG B:SER355 3.8 40.0 1.0
C B:VAL449 3.9 36.9 1.0
N B:ALA353 3.9 38.3 1.0
C B:PHE450 3.9 38.4 1.0
CA B:ARG451 4.0 40.5 1.0
N B:GLU351 4.1 37.2 1.0
CA B:PHE450 4.2 37.0 1.0
CA B:ALA353 4.2 37.8 1.0
N B:GLY352 4.2 39.8 1.0
C B:GLY352 4.4 40.2 1.0
O B:ARG451 4.5 43.0 1.0
N B:PHE450 4.5 36.3 1.0
O B:PHE450 4.6 38.6 1.0
CB B:ALA353 4.6 39.6 1.0
N B:LYS354 4.7 40.4 1.0
C B:ARG451 4.7 40.5 1.0
CA B:GLY352 4.7 39.5 1.0
CB B:ALA357 4.8 37.6 1.0
OD1 B:ASP399 4.8 36.9 1.0
CG2 B:VAL449 4.8 37.6 1.0
N B:SER355 4.8 41.4 1.0
C B:LYS354 4.9 42.8 1.0
CG B:ARG451 4.9 40.2 1.0
CB B:VAL449 4.9 34.4 1.0
CA B:VAL350 4.9 37.9 1.0

Reference:

H.L.Axelrod, D.Mcmullan, S.S.Krishna, M.D.Miller, M.A.Elsliger, P.Abdubek, E.Ambing, T.Astakhova, D.Carlton, H.J.Chiu, T.Clayton, L.Duan, J.Feuerhelm, S.K.Grzechnik, J.Hale, G.W.Han, J.Haugen, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, E.Koesema, A.T.Morse, E.Nigoghossian, L.Okach, S.Oommachen, J.Paulsen, K.Quijano, R.Reyes, C.L.Rife, H.Van Den Bedem, D.Weekes, A.White, G.Wolf, Q.Xu, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. Crystal Structure of Aicar Transformylase Imp Cyclohydrolase (TM1249) From Thermotoga Maritima at 1.88 A Resolution. Proteins V. 71 1042 2008.
ISSN: ISSN 0887-3585
PubMed: 18260100
DOI: 10.1002/PROT.21967
Page generated: Mon Aug 12 05:53:48 2024

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