Atomistry » Potassium » PDB 1w2b-1yj9 » 1yit
Atomistry »
  Potassium »
    PDB 1w2b-1yj9 »
      1yit »

Potassium in PDB 1yit: Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui

Protein crystallography data

The structure of Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1yit was solved by D.Tu, G.Blaha, P.B.Moore, T.A.Steitz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.99 / 2.80
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 212.583, 299.758, 573.560, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 22.1

Other elements in 1yit:

The structure of Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui also contains other interesting chemical elements:

Magnesium (Mg) 118 atoms
Cadmium (Cd) 5 atoms
Chlorine (Cl) 22 atoms
Sodium (Na) 85 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui (pdb code 1yit). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui, PDB code: 1yit:

Potassium binding site 1 out of 1 in 1yit

Go back to Potassium Binding Sites List in 1yit
Potassium binding site 1 out of 1 in the Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Virginiamycin M and S Bound to the 50S Ribosomal Subunit of Haloarcula Marismortui within 5.0Å range:
probe atom residue distance (Å) B Occ
0:K8402

b:66.9
occ:1.00
O4 0:U172 3.0 32.8 1.0
O4 0:U163 3.1 31.8 1.0
OP2 0:C162 3.2 22.8 1.0
CD M:ARG82 3.5 38.2 1.0
C4 0:U172 4.0 31.4 1.0
C4 0:U163 4.1 30.0 1.0
N3 0:U172 4.2 31.6 1.0
N4 0:C171 4.4 33.4 1.0
NE M:ARG82 4.4 39.9 1.0
OP2 0:A169 4.4 27.4 1.0
P 0:C162 4.5 26.0 1.0
CG M:ARG82 4.6 38.8 1.0
C5 0:U163 4.7 29.7 1.0
CB M:ARG82 4.7 38.9 1.0
OP1 0:A169 4.7 28.3 1.0
O6 0:G164 4.8 27.5 1.0
OP1 0:C162 4.8 23.6 1.0
MG 0:MG8054 4.9 32.1 1.0

Reference:

D.Tu, G.Blaha, P.B.Moore, T.A.Steitz. Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide A Structural Explanation For Resistance. Cell(Cambridge,Mass.) V. 121 257 2005.
ISSN: ISSN 0092-8674
PubMed: 15851032
DOI: 10.1016/J.CELL.2005.02.005
Page generated: Sun Dec 13 23:05:53 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy