The binding sites of Potassium atom in the structure of Crystal Structure of the PDK3-L2 Complex (pdb code 1y8p). This binding sites where shown with 5.0 Angstroms radius around Potassium atom. The 1y8p structure was solved by M.KATO, J.L.CHUANG, R.M.WYNN, D.T.CHUANG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 50.0-2.6 | Space group | P6522 | a (A) | 120.904 | b (A) | 120.904 | c (A) | 240.085 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 120.00 | Rfactor (%) | 20.4 | Rfree (%) | 23 |
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Potassium binding site 1 out of 2 in 1y8p
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Potassium in the PDB 1y8p. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Potassium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ser20, A: Arg21, A: Phe22, A: Ser23, A: Pro24, A: Asn59, A: Val371, A: Phe372, A: Asn373, | conact list:
Atom | Atom | Distance (A) | K | O A:Ser20 | 2.63 | K | C A:Ser20 | 3.69 | K | CA A:Ser20 | 4.90 | K | O A:Arg21 | 3.69 | K | N A:Arg21 | 4.20 | K | C A:Arg21 | 3.63 | K | CA A:Arg21 | 3.85 | K | O A:Phe22 | 2.82 | K | N A:Phe22 | 4.10 | K | C A:Phe22 | 3.67 | K | CA A:Phe22 | 4.52 | K | N A:Ser23 | 4.33 | K | OG A:Ser23 | 4.80 | K | CA A:Ser23 | 4.40 | K | CD A:Pro24 | 4.73 | K | ND2 A:Asn59 | 3.92 | K | OD1 A:Asn59 | 2.96 | K | CG A:Asn59 | 3.81 | K | C A:Val371 | 4.73 | K | CG1 A:Val371 | 3.76 | K | O A:Phe372 | 2.51 | K | N A:Phe372 | 3.94 | K | CB A:Phe372 | 4.51 | K | CD2 A:Phe372 | 4.88 | K | C A:Phe372 | 3.61 | K | CA A:Phe372 | 4.21 | K | N A:Asn373 | 4.70 |
| interactive model:
| Potassium binding site 2 out of 2 in 1y8p
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Potassium in the PDB 1y8p. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Potassium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Arg299, A: Leu300, A: Phe301, A: Asn302, A: Tyr303, A: Met304, A: Tyr305, A: Gly325, A: Tyr326, A: Leu328, A: Pro329, A: Atp504, | conact list:
Atom | Atom | Distance (A) | K | O A:Arg299 | 4.84 | K | O A:Leu300 | 2.65 | K | C A:Leu300 | 3.80 | K | CA A:Leu300 | 4.75 | K | N A:Phe301 | 4.62 | K | C A:Phe301 | 4.50 | K | CA A:Phe301 | 4.60 | K | O A:Asn302 | 3.02 | K | N A:Asn302 | 4.36 | K | C A:Asn302 | 4.10 | K | CA A:Asn302 | 4.87 | K | N A:Tyr303 | 4.98 | K | N A:Met304 | 4.53 | K | C A:Met304 | 4.96 | K | O A:Tyr305 | 3.08 | K | N A:Tyr305 | 4.03 | K | CB A:Tyr305 | 4.28 | K | CD2 A:Tyr305 | 4.85 | K | C A:Tyr305 | 4.05 | K | CA A:Tyr305 | 4.33 | K | O A:Gly325 | 2.92 | K | C A:Gly325 | 3.51 | K | CA A:Gly325 | 3.71 | K | N A:Tyr326 | 4.55 | K | N A:Leu328 | 4.90 | K | CB A:Leu328 | 4.49 | K | CD A:Pro329 | 3.78 | K | CG A:Pro329 | 4.44 | K | PA A:Atp504 | 3.89 | K | C4' A:Atp504 | 4.84 | K | O5' A:Atp504 | 3.94 | K | O3A A:Atp504 | 4.13 | K | C5' A:Atp504 | 3.54 | K | O1A A:Atp504 | 2.83 |
| interactive model:
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